Hymenobacter monticola: MTP16_17225
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Entry
MTP16_17225 CDS
T08220
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hmt
Hymenobacter monticola
Pathway
hmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTP16_17225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmt03019
]
MTP16_17225
Enzymes [BR:
hmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTP16_17225
Messenger RNA biogenesis [BR:
hmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTP16_17225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
P-loop_SecA
UvrD-helicase
DUF7818
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UOE32865
UniProt:
A0ABY4B1J8
LinkDB
All DBs
Position
complement(4153381..4154901)
Genome browser
AA seq
506 aa
AA seq
DB search
MTFDDLNLIDPILKALKEEGYTNPTPIQEQAIPHVLEGKDLLGVAQTGTGKTAAFTVPIL
QVLHRTAQVANHAPRAIRCLVLTPTRELAIQINESFGAYGRHLSQIRHTVIFGGVGQNPQ
VQALKRGVEVLIATPGRLLDLMNQGFVDLRQIEVFVLDEADRMLDMGFIHDIKRILPKLP
AKRQTLFFSATMPGQIQELAASILRPNPVRVAVTPVSSTADTVTQSVYLVENNDKPALLR
HILQDKDIKRVLVFTRTKHGADKVVKTLAANSIPAEAIHGNKSQNHRQRALANFKAGSTR
VLVATDIAARGIDVDELTHVINYEIPNEPETYVHRIGRTGRAGAFGTAFSFVEEEERAYL
QDIQKLISRQIEVDEHPFASGRIKPVMLHGNERIIRPKGPAGRPARGPREGGNGGGGRSG
GGQGGARSGGGRGGERPSGSGNNGGGRPSGERSRPAAPANNGQSDTARRFGSGGARVNVG
GNREGGDRNLGGRRRGDAGGARRGSF
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgacgatttaaacctgattgaccccattcttaaagccctcaaagaggaaggc
tacaccaaccccactcccattcaggaacaagccattccgcacgtgctggaaggcaaagac
ctgctgggcgtggcccaaacgggcaccggcaaaaccgctgctttcaccgtgcccatcctg
caggtgctgcaccgcacggcccaggtggccaaccacgcgccccgcgccattcgctgcctc
gtgctcacgcccacccgcgagctcgccatccagattaacgaaagctttggcgcctacggc
cgccacctgagccagattcgccacacggttatcttcggtggcgtgggccagaacccgcag
gtgcaggcgctcaagcgcggcgtggaggtgctcattgccacccccggccgcctgctcgac
ctcatgaatcagggcttcgtcgacctgcgccaaatcgaggtgttcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagcgcatcctgcccaagctgccc
gccaagcgccagacgctgtttttctcggccaccatgcccggccagattcaggaactggcc
gccagcatcctgcgtcccaacccggtgcgcgtggccgtgacgcccgtcagcagcaccgcc
gacaccgtgacgcagtctgtgtacctcgtggaaaataacgacaagcccgccctgctccgc
cacattctgcaggacaaggacatcaagcgcgtgctggttttcacccgcaccaagcacggc
gccgacaaagtggtgaaaactctggccgccaattccattccggccgaagccatccacggc
aacaaaagccagaaccaccgccagcgcgccctcgccaatttcaaagccggcagcacccgc
gtgctggtggccaccgacattgccgcccgcggcatcgacgtggacgagctgacccacgtc
atcaactacgaaatcccgaacgagcccgaaacctacgtgcaccgcatcggccgcactggc
cgggccggcgccttcggcaccgcgttttccttcgtggaagaagaagagcgcgcctacctg
caggacatccagaagctcatcagccggcagattgaggtcgacgagcatccttttgcctcg
ggccgcatcaagccggtgatgctgcacggcaacgaacgcatcatccggcccaagggcccg
gccgggcgcccggcccgcggcccccgcgaggggggcaatggcggcggtggtcgttcgggc
ggtggccagggcggcgcacgctctggcggcggccgcggcggcgagcgtcccagcggcagc
ggcaacaacggcggcggccgccccagcggcgagcgcagccggcccgctgctccggccaat
aacggccagtccgataccgcccgccgcttcggcagcggcggcgcccgcgtgaacgtgggc
ggcaaccgcgaaggtggcgaccggaacctcggtggccggcggcgcggcgacgccggtggc
gcgcgccggggctcgttctag
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integrated database retrieval system
