Halomicrobium mukohataei: Hmuk_0272
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Entry
Hmuk_0272 CDS
T00982
Name
(GenBank) ribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hmu
Halomicrobium mukohataei
Pathway
hmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hmuk_0272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmu03019
]
Hmuk_0272
03016 Transfer RNA biogenesis [BR:
hmu03016
]
Hmuk_0272
Enzymes [BR:
hmu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Hmuk_0272
Messenger RNA biogenesis [BR:
hmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Hmuk_0272
Transfer RNA biogenesis [BR:
hmu03016
]
Prokaryotic type
tRNA degradation factors
Hmuk_0272
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF6000
Motif
Other DBs
NCBI-ProteinID:
ACV46409
UniProt:
C7NX44
LinkDB
All DBs
Position
268118..269431
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AA seq
437 aa
AA seq
DB search
MSNEDAQAEAGTPEGQGPVEIDEEMARHMANKREELFEKFEIRDAFPPEVMEEAEARTTD
VQAEIADEVDEREDLREMTTWTTDPIDAQDFDDAISVEERDDEYVLWVHIADVTHYVNPD
TAMWEEAVERGNTVYLPGYTIHMLPPMLAETVCSLVPNEDRLAHTVEMHLDKDDLGYEEI
DIYKSVIRSDARLTYTEAERLLDEPETAEELLEDQRVDLAEKTELIWNLADAMHEQRKEE
GSLVLNPARDRAHTIIEECMLKANKAVTHELMWDRGVEAMYRVHPQPSPEEWDEALVEIQ
ELDGVSIPGDAWDDPRKAVNATLEQAPGRQLDKIQWAVMKVMPRAKYMNDPFGGHHALNF
EIYGHFTSPIRRLSDLINHWIVYTNDVPEDLIALCDRASDKQKAAETCEREYKQFLEEIG
LDPSAVNNRGLEVVDED
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgaggacgcgcaggccgaggccggcacgccggaggggcaaggccccgtcgag
atcgacgaggagatggcccgccacatggccaacaagcgcgaggagctgttcgagaagttc
gagatccgcgacgcgtttccgcccgaggtgatggaggaggccgaagcgcgaaccactgac
gtgcaggccgagatcgccgacgaggtcgacgagcgcgaggacctgcgagagatgacgacg
tggaccacggacccgatcgacgcgcaggacttcgacgacgccatctccgtcgaggaacgg
gacgacgagtacgtcctgtgggtccacatcgccgacgtgacccactacgtcaaccccgac
accgcgatgtgggaagaggccgtcgagcggggcaacaccgtctacctgcccggctacacc
atccacatgctgccaccgatgctggccgagactgtctgttcgctcgtccccaacgaggat
cggctggcccacaccgtcgagatgcacctcgacaaggacgatctgggctacgaggagatc
gacatctacaagtcggtgatccgcagcgacgcccggctcacctacaccgaggccgagcgc
ctgctcgacgagcccgagacggccgaggagctactcgaagaccagcgcgtcgacctggcc
gaaaagaccgaactcatctggaacctcgcggacgcgatgcacgagcaacgcaaggaagag
gggtcgctcgtgctcaacccggcccgtgaccgcgcccacacgatcatcgaggagtgcatg
ctcaaggccaacaaagccgtcacgcacgaactcatgtgggatcgcggcgtcgaggcgatg
taccgcgtccacccccagcccagccccgaagagtgggacgaggccctcgtcgagatccag
gaactcgacggcgtctcgatccccggcgacgcctgggacgacccacggaaggccgtcaac
gcgacgctggagcaggcaccgggccgacagctggacaagattcagtgggccgtcatgaag
gtgatgccccgcgcgaagtacatgaacgaccccttcggcggccaccacgccctgaacttc
gagatctacgggcacttcacctcgccgatccgacggctctcggacctgatcaaccactgg
atcgtctacacgaacgacgtgccagaggacctgatcgcgctgtgtgatcgcgccagcgac
aagcagaaggcagccgagacctgcgagcgcgagtacaagcagttcctcgaagagatcggt
ctcgatccgtctgcggtgaacaatcgcgggctggaagtagtggacgaggactga
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