Halomicrobium mukohataei: Hmuk_2088
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Entry
Hmuk_2088 CDS
T00982
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hmu
Halomicrobium mukohataei
Pathway
hmu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hmuk_2088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmu03019
]
Hmuk_2088
03009 Ribosome biogenesis [BR:
hmu03009
]
Hmuk_2088
04131 Membrane trafficking [BR:
hmu04131
]
Hmuk_2088
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hmu04147
]
Hmuk_2088
Messenger RNA biogenesis [BR:
hmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hmuk_2088
Ribosome biogenesis [BR:
hmu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hmuk_2088
Membrane trafficking [BR:
hmu04131
]
SNARE
SNARE associated proteins
Others
Hmuk_2088
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hmuk_2088
Exosome [BR:
hmu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hmuk_2088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_14
TIP49
AAA_22
AAA_33
nSTAND3
NPHP3_N
RNA_helicase
AAA_7
AAA_28
IstB_IS21
DUF815
Mg_chelatase
ABC_tran
AAA_3
ATPase
TsaE
AAA_18
Zeta_toxin
AAA_25
AAA_24
AAA_17
Sigma54_activat
Parvo_NS1
NACHT
AAA_30
AAA_11
NB-ARC
AAA_lid_PRS2_C
PhoH
SLFN-g3_helicase
AAA_19
bpMoxR
NTPase_1
Vps4_C
Bac_DnaA
ATPase_2
ATP-synt_ab
Zot
Motif
Other DBs
NCBI-ProteinID:
ACV48201
UniProt:
C7NW72
LinkDB
All DBs
Position
1997661..1999934
Genome browser
AA seq
757 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRAAMDEMDLENGDYIVIDGDGGRAVARVWPGYPEDSGKN
VVRIDGQLRQEAGVGIDDQIEVEKADVQVAKQVTVALPQNLRVRGNVGPMIRNNLSGQAV
TQGQTVPVSFGLGPLSSMSGQKIPLRIAETEPSGTVVVTDQTDIEVSEKPAEQIAGDAPT
EGGGEATPDVAYEDIGGLDSELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGK
TLMAKAVANEIDAHFTTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDEIDSIAP
KRGETQGDVERRVVAQLLSLMDGLDERGDVIVIGATNRVDAIDPALRRGGRFDREIEIGV
PDKEGRKEILQVHTRGMPLSEDIDLESYAENTHGFVGADLAQLTKEGAMNALRRIRPDID
LESDEIDAEVLESLEVSKQDFKEALKGIEPSALREVFVEVPDTSWDSVGGLEDTKERLRE
TIQWPLEYPSVFEQMDLQAAKGVLLYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKF
VGESEKGVREVFSKARENAPTVVFFDEIDSIAAERGSGGGDSQVGERVVSQLLTELDGLE
AMEDVVVIATTNRPDLIDSALIRPGRLDRHVHVPVPDEDARRAIFQVHTRGKPLADGVDL
DQLARRTEGYVGADIEAVAREASMAATREFINSVDPDDIDDSVSNVRITMDHFEQALDEV
GPSVDEDVRERYDEIEERFDHAEAELDDGETASRTFQ
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttacggtaaaacccctcaagcagaaagacgccggacgcggtctcgcggccgtc
gaccgtgcagcgatggacgagatggacctggagaacggcgactacattgtcattgacggc
gacggcggtcgcgcggtcgcccgtgtctggcccggataccctgaagacagcggcaagaac
gtcgtccggatcgacggccagctccgacaggaagccggcgtcggcatcgacgaccagatc
gaggtcgagaaggcagacgtacaggtcgcaaagcaggtcaccgtcgccctgccccagaac
ctccgggtgcggggcaacgtcggtccgatgatccgcaacaacctcagcggccaggcggtc
acgcagggccagacggtgccagtgagcttcgggctcggtccgctttcgagcatgagcggc
cagaagatcccgctgcggatcgccgagactgaaccctctgggacggtcgtggtgaccgac
cagaccgacatcgaagtcagcgagaagccggccgaacagatcgcgggcgacgccccgacc
gagggcggcggcgaagccacgccggacgtggcctacgaggacatcggcggcctcgacagc
gaactcgaacaggtccgcgagatgatcgagctgccgatgcgccaccccgaactgttccag
cagctcggcatcgagccgccgaaaggcgtcctcctgcacgggccgccgggcaccgggaag
acgctgatggccaaggccgtcgccaacgagatcgacgcccacttcacgaccatcagcggc
ccggagatcatgtcgaagtactacggagagagcgaagagcagctccgcgaggtcttcgag
gaggccgaggagaacgccccggccatcgtcttcatcgacgagatcgactcgatcgcgcca
aagcgcggcgagacccagggcgacgtggaacgccgtgtcgtcgcacagctcctctcgctg
atggacgggctcgacgaacgcggtgacgtgatcgtcatcggcgcgaccaaccgcgtggac
gcgatcgaccccgcactgcgccgcggcggccgcttcgaccgcgagatcgagatcggcgtg
ccggacaaggagggtcgaaaggagatcctgcaggtccacacccgcgggatgcccctctcc
gaggacatcgacctcgaatcctacgccgagaacacgcacggcttcgtcggtgcggacctc
gcacagctgaccaaggagggcgcgatgaacgccctgcggcgcatccgcccggacatcgac
ctcgaatccgacgagatcgacgccgaggtgctcgaatcgctggaggtctccaagcaggac
ttcaaagaggcgctgaaggggatcgagcccagcgcgctccgcgaggtcttcgtcgaagtc
ccggacacctcctgggactcggtcggcggcctcgaagacaccaaagagcgcctgcgcgag
acgatccagtggccactggagtaccccagcgtgttcgagcagatggacctgcaggccgcc
aagggcgtcctgctctacggcccgccgggcaccgggaagacgctgctggccaaagccgtc
gccaacgaggcccagtcgaacttcatctcgatcaagggccccgaactgctgaacaagttc
gtcggcgagtccgagaagggcgtgcgcgaagtgttcagcaaggcccgagagaacgccccg
accgtcgtcttcttcgacgagatcgactcgatcgcggccgaacgcggctcgggcggcggc
gactcgcaggtcggcgaacgcgtcgtctcccagctcctgaccgaactggacgggctcgaa
gcgatggaggacgtggtcgtgatcgccacgaccaaccgaccggacctcatcgactcggcg
ctgatccggcccggacgactggaccgccacgtccacgtcccggtccccgacgaggacgct
cgccgggcgatcttccaggtccacacccgcggcaagccactcgccgacggcgtcgacctc
gatcagctcgcacggaggaccgagggatacgtcggtgccgacatcgaagcagtcgcccgc
gaggcctcgatggccgcgacccgggagttcatcaacagcgtcgaccccgacgacatcgac
gactccgtcagcaacgtccgcatcacgatggaccacttcgagcaggcgctcgacgaagtc
gggccgagcgtcgacgaggacgtgcgggaacgctacgacgagatcgaagaacggttcgat
cacgccgaggcggaactggacgacggcgagacggcctcgcgaaccttccagtag
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