Halomicrobium mukohataei: Hmuk_3309
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Entry
Hmuk_3309 CDS
T00982
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein (contains helicase and exonuclease domains)
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hmu
Halomicrobium mukohataei
Brite
KEGG Orthology (KO) [BR:
hmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmu03400
]
Hmuk_3309
Enzymes [BR:
hmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hmuk_3309
DNA repair and recombination proteins [BR:
hmu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hmuk_3309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
AAA_30
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
ACV49404
UniProt:
C7P509
LinkDB
All DBs
Position
pHmuk01:110210..113638
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AA seq
1142 aa
AA seq
DB search
MTDGVPPLEGAQDRIRDAFLAHDRGLFVLDCTAGFGKSTTVERVAAEALVEAGAQAAAPE
RGLCVVSFSREDAAGIVPGITAALAAFADDEQPTATTISPERSRRLQERVRHADHVGTID
SIFRTVFTEIHAEYGFEQMPTVGNDARLSSLREAALDALRGRESLTARFDRLDEAYGDET
ASDGRGADGRTLDTLLETARSAKRARRLSDEQFRDRLLGAIDEAFPDGRPATFDAVVRDV
ARFFDEETAAAFRRRHDDEAAVTAQSRACFDRWRARVEEFCSLVVAYETEYDRRCRERGV
LAHQDVAYWVADFFDESGDADDSFRERVRQRHAHALQTLVIDEAQDVSVAQHDALAPLVP
DDARVLLAGDTDQCIYAWRDARPALFTRAFDEGTYFGRSWTPHERADAARTYRMRPDVSA
AVDAVFETVFTDPARGAVHRTGDGYAPVETDREATSEPAVHVASYRARGSPGTTTWFEES
EAAPLSNYLHGALADDGFAGRDADGPVEVLFPTRTNMRSLAARLEAKGLSVADASELLFE
TPLVELVVGVVEWLVDPFDPERTRALFDGAVPAVTCDDGSTVREIAAAADYRLDEIGADD
RLPARVETFLDDLAELRGRLARRTADPGALVVATVVETLALGTDPFDQVDDPRRCLAVLD
TLVETVESWEGTDRYSLSELAGVLQRYRASPSHGPLVPVPDDSDYDVVFRTIHNAKGDEA
DIVCLADLSRPLGVHGPHRDSFVARGETLALAPPATAPSVPVDEPSAHGVESVPRLRWAT
NRWVGDEQPRLGGPPVFSELAAAHRADRWRTLYVAMTRARDHLVLSVPRDATSHGTPPQD
SWVTTIRRALALPDSLERGRIDTALQRPTGEYPLAIGCLDVAYDASVSQSSRPTPRTALA
PSPTRTGRTPRFVNGSTLYPLATGLDEHWLAHLKGAPLHSDRPAPDDGLPLAFDAVGPDD
LGTIAHDVLTTAVDRGVSTATLEDCAEPLAGRLDAAIDEQCRDVGGRERQQVASYVRETV
CPQFASTGVWERLQSSAVYVEEPLDAVLPVADHTIETRNHADIVSRAPDGTWYVDDIKLV
LADTDATRDRYALQTAFYAWLLERQLDDATVRGRITCVGERVDSTAGTAPVDDIESWLAR
FA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacggcgtcccgcccctggagggcgcacaggaccggattcgcgacgcgttcctc
gctcacgaccgggggctgttcgtcctcgactgtacggcgggctttggcaagtcgacgacc
gtcgagcgcgtcgccgccgaggcgctggtcgaagcgggcgcgcaagcggccgctcccgaa
cgggggctctgcgtcgtctcgttctcccgcgaggacgctgccggtatcgttccggggatc
actgccgcgctggccgcgttcgccgacgacgagcagccgacggcgaccactatcagcccc
gagcgttcacggcggctccaggagcgggtccgccacgccgaccacgtcgggaccatcgac
agcatctttcgcaccgtcttcacggagattcacgccgagtacggcttcgagcagatgccg
acggtcggcaacgacgcgcgactctcctcgctccgagaagcggcgctggacgccctgcgt
ggtcgcgagtcactgacggcccggttcgaccgtctcgacgaggcctacggcgacgagacg
gccagcgacggacggggggccgacgggcgcacgctggacacgctgctcgaaacggcccgc
tcggccaagcgcgcccgcaggctctccgacgagcagttccgcgacagactcctgggcgcg
atcgacgaggcctttccggacggtcgcccggccacgttcgacgccgtggtccgtgacgtg
gcgcggttcttcgacgaggagaccgccgcggcgttccggcgacgccacgacgacgaggcg
gcggtcacggcccagtcccgggcgtgtttcgaccgctggcgtgcgcgcgtcgaggagttc
tgttcgctcgtggtcgcctacgagaccgagtacgaccgccggtgtcgcgagcgcggcgtg
ctcgcccaccaggacgtggcgtactgggtcgccgacttcttcgacgagtccggcgacgcc
gacgactcgttccgcgagcgggtccgacagcgccacgctcacgccctccagaccctcgtc
atcgacgaggcccaggacgtgtccgtcgcacagcacgacgcgctcgcgccgctggtcccc
gacgacgcccgcgtcctgcttgccggggacaccgaccagtgtatctacgcctggcgcgac
gcccggccggcgctgttcacgcgagcgttcgacgaggggacgtacttcgggcgctcctgg
acgccccacgagcgggccgacgccgcacggacctatcggatgcgaccggacgtctcggcg
gccgtcgacgccgtcttcgagacggtctttaccgatcccgcacgcggtgccgtacaccgg
accggcgacggctacgcgcccgtcgagaccgaccgcgaggcgacgagcgagccggcggtc
cacgtcgcgagctaccgggcgcggggctctccggggacgaccacgtggttcgaggagagc
gaagcagcgccgctctcgaactacctccacggtgcgctggccgacgacggcttcgcgggc
cgagacgccgacggcccggtggaggtcctctttccgacgcggacgaacatgcgctcgctc
gccgctcgtctggaagcgaaggggctgtccgtcgccgacgccagcgaactgctgttcgag
accccgctcgtcgaactcgtcgtcggcgtcgtcgagtggctcgtcgatccgttcgacccg
gagcgaacgcgcgcgctcttcgacggcgcggttccggcggtgacctgcgacgacgggtcg
accgtccgagagatcgctgccgcagccgactatcgcctcgacgagatcggggccgacgat
cgactcccggcccgcgtcgagacgttcctcgacgacctcgccgaactccgcgggcggctc
gcgcgacggacggccgatccgggggcgctcgtcgtcgcgaccgtcgtcgagacgctggcc
ctggggaccgacccgttcgaccaggtcgacgatccgcggcgctgtctcgccgtcctcgat
acgctcgtcgagaccgtcgagtcgtgggaggggaccgaccgctactcgctgtccgagctg
gccggcgtcctccagcggtaccgcgcgtccccgtctcacgggccgctcgtcccggtgccc
gacgacagcgactacgacgtggtgttccggacgatccacaacgcgaaaggcgacgaggcc
gatatcgtctgcctggccgacctgagccgaccactcggggtccacggcccacatcgcgat
tcgttcgtggcccgcggtgagacgctcgcgctcgcaccgccagcgaccgcgccgtcggtt
cccgtcgacgaacccagcgctcacggcgtcgagtcggtgccgcggctccgctgggcgacg
aaccgctgggtcggggacgagcagccgcgactcggcggaccgccggtgttcagcgagctc
gccgccgcacaccgcgcggaccgctggcggacgctgtacgtcgccatgacgcgggcccgg
gaccacctcgtcctctcggtgccacgggacgcgacgagccacggaacgccgccacaggac
agctgggtgacgacgatccggcgggcactcgctctccccgactcgctggagcgcggccgg
atcgacaccgcgctccagcgaccgaccggggagtacccgctggcgatcggctgtctcgac
gtggcctacgacgccagcgtctcgcagtcgagtcgcccgacgccgcggactgcgctcgcg
ccgtcgccgactcggacgggccggacgccccgcttcgtcaacggcagtacgctctacccg
ctggcgacgggactggacgagcactggctcgcccacctcaagggggccccgctccacagc
gaccgtcccgctcccgacgacggcctcccgctggccttcgacgcggtcggccccgacgac
ctcgggacgatcgcacacgacgtgctcacgaccgccgtcgatcgaggcgtctcgaccgcg
acgctggaagactgtgccgaaccgctcgcggggcggctcgacgccgctatcgacgagcag
tgccgcgacgttggcggccgtgagcgccagcaggtggcgagctacgtccgcgagaccgtc
tgcccgcagttcgcctcgaccggcgtctgggagcgcttgcagtcgagcgccgtctacgtc
gaggagccactcgacgccgtgcttcccgtggccgaccacaccatcgagacccggaaccac
gccgacatcgtctcgcgcgctccggacggcacgtggtacgtcgacgacatcaagctcgtc
ctcgccgacaccgacgccacccgggaccgatacgcgctccagaccgccttctacgcctgg
ctgctcgaacgccagctcgacgacgcgacggtccgggggcgcatcacgtgcgtgggcgag
cgcgtcgactcgacggccggcactgcgccggtcgacgacatcgagtcgtggctcgcgcgg
ttcgcgtga
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