KEGG   Helicobacter mastomyrinus: V3I05_01175
Entry
V3I05_01175       CDS       T11030                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta/beta'
  KO
K13797  DNA-directed RNA polymerase subunit beta-beta' [EC:2.7.7.6]
Organism
hmy  Helicobacter mastomyrinus
Pathway
hmy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hmy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    V3I05_01175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hmy03021]
    V3I05_01175
   03400 DNA repair and recombination proteins [BR:hmy03400]
    V3I05_01175
Enzymes [BR:hmy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     V3I05_01175
Transcription machinery [BR:hmy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     V3I05_01175
DNA repair and recombination proteins [BR:hmy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      V3I05_01175
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb2_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb1_4 RNA_pol_Rpb2_1 Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: XAM18332
LinkDB
Position
complement(218373..227057)
AA seq 2894 aa
MANFTKLKNRLRADFTKNPQNIEVPNLLLLQRDSYDDFLSIEGEGESGIERVFKSVFPIQ
DSQNRITLEYAGCKFGKPKYTTNEAMVRGVTYAISLQVKIRLVLWEKDEKTGEKLGVKDV
KEQNIFVRDIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESNTSSNKLIYTGQIIP
DRGSWLYFEYDSKDVLYARINKRRKVPVTIILRAMGYSKQDILKIFYPLQKVTYKKGKYL
IPFDIDSIGNRAEFDIKDAKGNLLVASGKRLSAKKIKELKEARIDLIEYPLESLTNKFLA
QPILNSQGEVLFDTLTQLDESKLKKLLELKINEFVIANDSAAGVDSSIINSFIADAESLK
MLRQSEKIDDENELAAIRIYKVMRPGEPVTKEVAKNFMRQLFFDSERYDLTRVGRMKMNH
KLQINVPDYVTVLTHEDIIKTIRYLLKVKNGLGKIDDRDHLGNRRIRSSGELLANELHAG
LVKMQKAIRDKLTSLSGAFDTIMPHDLVNGKMITSTIMEFFTGGQLSQFMDQTNPLSEIT
HKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTYTRVNDLG
FIEAPYKRVENGVVTNEIVYLTAAQEEGIVIAPASTKVDKNGHIVEDLIDARKDGEIILS
EKSRIQLIDLSPRMLVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLKPDAPVVGTGIE
QIIARDAWEAVKATRSGVVERVDSKNIYILGEDDNGAYIDHYHLGKNLRTNQNTCFSQQP
IVQVGDKVEAGQIIADGASMDNGELALGKNIRVAFMPWNGYNFEDAIVVSEKLIKEDAFT
SIHIYEKEIEARELKHGLEEITADIPGTKESETAHLDESGIVRIGTYVSAGMILVGKVSP
KGEVKPTPEERLLRAIFGEKAGHVVNKSLYCPPSLEGTVVDVKIFTKKGYEKDARAISAH
DEERRVLDIEHHDRLTMIQQEEALRISLMLSKEKLASDAKVANKVFKKGTQISKEELATF
NPFTLSILLKSYSKAVQTRYEQIKRNFLEQKKTLGEEHEEKLSILEKDDILPSGVVKLVK
IYIATKRKLKVGDKMAGRHGNKGIVSNIVPMVDMPYTADGEPVDIVLNPLGVPSRMNIGQ
ILEVHLGLVGKNLGQQIQEIFQSQSKQWINALRSKMIEIAQVVNSNDKTMVSFLESMSDE
DLMSYARDWSNGVKFAIPVFEGIEQEKFDKLFALAKIDTDGKTELYDGKTGEKMRERVNV
GYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTL
KEMLTIKSDDTEGRRGAYKAITKGEHVGESEIPETFYVLTKELQSLALDVNIYGEEKDEN
GAALPIVIKEDERPKDFSSFQLVLASPEKILSWSHGEVKKPETINYRTLKPERDGLFCTK
IFGPVRDYECLCGKYKKMRYKGIVCEKCGVEVTRAKVRRSRMGHIELVAPVAHIWYVSSL
PSRIGTLLGVKMKDLERVLYYEAYIVKTPGEAFYDNEGTKPILKYDVLNEEQFQSINQRF
EHTGFVAQMGGEAIKELLEELDLMVLLSALREEINLTNSEAKKKTIVKRLKVVESFINSG
NRPEWMMLTILPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNQRLKRLIELDSPEII
VRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSG
RSVIVVGPNLKMDQCGLPKNMALELFKPHLFAKLEEKGYATTLKQAVKMVSQKTNEVWEC
LQEIVNGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVP
LSQEAIAECKVLMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEKKGVKGEHKVFASID
EIFMAIEMGELDINARIKTVHKRRVIDTTAGRMILSSILPDFVPLSLWNQTMKKKDIGIL
IDYVYKEGGLGITATFLDNLKNLGFRYATKAGISISAADIIIPHDKAKMIDDAKKEIKRI
QGEFEQGLLTAQERYNKSIDIWTETSEKMGKLMMEKVKNDKEGFNSIYMMADSGARGSEA
QIRQLSAMRGLMAKPDGTIIETPITSNFKEGLNVLEYFNSTHGARKGLADTALKTANAGY
LTRKLIDVSQNMKVTIEDCGTHEGVEITDITVGSDMIEPLEERVVGRVLARDIIDPIANE
ILLSEGVLIDNAMARRIKEANVKSVMIRTPVTCKAPKGVCAKCYGLNLGESKMVKPGEAV
GVLAAQSIGEPGTQLTLRTFHVGGTASRSTEEKQIIAKKEGFIRYHNIRTYTNSKGQKIV
ANRRNAAILVVEPRIKAEFDGEIRVESVHDEVHITIVGDKKHSVTHRLRKDEVAKQNELA
GVAGKIEGKLLVPHESGYKVKAGGSVVDIIMDSWNVPTRIPYGSELKVEDNAPISQKITA
KEKGVVKFYTLRSDTLERNHNVKAGMVVNEKGMFAVIADQNDREAIRHYIARTSKILVDD
NSEVDINTLISEPTSSEQIVVAEWDAYSEPIIADQAGVVSFRDVVAGLTVSEQEDENTHQ
KNFVINEYVPAGYKPMIVVTTKEGKEMAYRLESRTSIAVNDGDKVEVADIIAKVPKALAK
SKDITGGLPRVTELFEARKPKDTAILSELDGTVSFGKPMRGKERIIITSADGRVAEYLVD
KNKKILVHEQEFIHAGEAMTDGVVSSHDILRISGEKELHKYIVSEVQQVYRRQGVSIADK
HIEIIVSQMLRQVKIVDSGNTKFIAGDLVSKRHFKEENERILRMGGEPAIAEPVLLGITR
AAIGSDSIISAASFQETTKVLTEASIAAKKDTLDDLKENVVLGRMIPVGTGLYKNKKFSY
KGDEQEYYCDSEEE
NT seq 8685 nt   +upstreamnt  +downstreamnt
atggcaaacttcacaaaactgaaaaatagactccgcgctgattttactaaaaatcctcaa
aatatcgaagtccctaatcttttattgctccaaagagatagctatgatgatttcctttct
atcgagggagagggagaatctggtattgagcgggtattcaagtctgtttttcccattcaa
gatagccaaaaccgcattacgcttgaatatgcaggatgtaaatttggtaagcctaaatat
actacaaatgaggcaatggttcgtggtgtaacctatgctatatcactacaagtaaaaatt
cgcctagtgctttgggaaaaagatgaaaaaacgggtgaaaagctaggcgtaaaagatgtt
aaagaacaaaatatttttgtccgcgatattcctcttatgacagacagaacaagctttatt
attaatggcgttgaacgcgtcgtggtcaatcaactccatcgtagcccgggagtgattttc
aaagaagaggaatctaatacttcatcaaataaactcatctacacagggcagattatcccc
gatagaggctcttggctatattttgagtatgattctaaagatgtgctttatgcacgtatc
aataagcgtagaaaagtgcctgtaactattattttgcgtgcaatggggtatagcaaacaa
gatattcttaagattttttaccccttgcagaaagtaacatataaaaaaggtaaatatctt
atcccctttgatattgatagtataggcaatcgtgcagaatttgatattaaagatgcaaaa
gggaatcttttggtagcttcgggcaagcgtctatctgctaaaaaaatcaaggagcttaaa
gaggcaagaatcgatcttattgaatatccccttgagagtttgacaaataagttccttgct
caacctattttaaactcgcaaggtgaagtgctttttgacactctcacacagcttgatgag
agtaagctaaaaaaactccttgagttaaaaatcaatgagtttgtgatagccaatgatagt
gctgcaggtgtggatagctctattattaactcatttattgctgatgcagaatctttaaaa
atgctccgtcaaagcgaaaagattgatgatgagaatgaattagctgctattagaatctat
aaagtaatgcgtccgggtgagcctgtaacaaaagaggtggcaaagaactttatgcgtcag
cttttcttcgattctgaacgttatgatttgacacgtgtaggacgtatgaaaatgaatcat
aaactgcaaattaacgtgcctgattatgttactgtgctcacacacgaggatattattaag
acaattcggtatcttttgaaagttaagaatggcttgggtaagattgatgatagagatcat
ttaggtaaccgtagaatccgttcaagtggtgagcttttggctaatgaacttcacgcaggg
cttgtaaaaatgcaaaaagctatacgtgataagcttacttcactaagtggagcgtttgat
acgattatgcctcacgatttggtcaatggcaagatgattactagcacgattatggaattt
ttcaccggtgggcagctttcacaatttatggatcaaactaaccctctttcggaaattaca
cataaacgaagactttcggctcttggagagggtgggcttgtaaaagatagagtaggtttt
gaggcaagagatgtgcatcctacacattatggtagaatctgccctattgaaacaccagaa
gggcaaaatattggtttgattaatacactttctacctatacgcgcgtgaatgacttaggt
tttattgaagcaccttataaaagagtagaaaatggcgtagtaacaaatgaaattgtttat
cttactgctgcacaagaagagggtatagtgattgctccagctagcacaaaggtagataaa
aatgggcatattgttgaagatttgattgatgcacgcaaagatggagagattattttaagt
gagaaatcacgtattcaacttattgacttaagccctcgtatgctcgtaggtgtggctgct
tctctcattccatttctcgagcacgatgacgcaaaccgtgcgcttatgggttcaaatatg
cagcgacaagctgtcccattgcttaaacctgatgcacctgtggtaggaacaggtatcgag
caaatcattgcacgtgatgcttgggaggctgttaaagctactcgcagtggtgtagtagaa
agagtggattctaaaaatatctatatacttggtgaagatgacaatggagcatatattgat
cattatcatttgggtaaaaatctccgtaccaatcaaaatacctgcttttcacagcagcct
attgtgcaagtaggagataaggtagaagcagggcaaattattgctgatggtgcaagtatg
gataatggtgagctggcattgggaaaaaatatccgtgtcgcctttatgccatggaatggt
tacaacttcgaagatgcgattgtcgtaagtgaaaaacttatcaaagaagatgcctttaca
tcaattcatatttatgaaaaggaaattgaagcacgggagcttaagcacggacttgaggaa
attacagctgatattccaggcactaaagaatcagaaacagcgcatcttgatgaaagtggg
attgtgcgaataggcacatatgtaagtgcgggtatgatacttgtaggaaaagtttctcct
aagggtgaagtgaaacctactcctgaagaaaggcttttgcgtgctatctttggtgaaaaa
gccggacacgtggtaaataaatcactttattgcccaccttctcttgagggaacggtggtt
gatgtgaagatattcacaaaaaaaggttatgagaaagatgcacgtgccataagcgcgcac
gatgaggaaagacgtgtgcttgatattgagcatcacgatcgtttaacgatgattcaacaa
gaagaagccttaagaatctctcttatgctatctaaagaaaaactcgcaagtgatgctaaa
gtggctaataaagtcttcaaaaaaggcacacagatttccaaggaagagttagctacgttt
aatcctttcactttaagtattcttctcaagagttattctaaggctgtgcaaacacgatat
gagcaaattaaaagaaacttcttagagcagaaaaaaactttaggtgaagaacacgaggag
aagctttctattttagaaaaagatgatattttgccaagtggtgtagtaaaacttgtaaaa
atttatattgccacaaaacgcaagctcaaagtgggtgataaaatggcaggacgtcacgga
aataaaggtattgtatctaatattgtgcctatggtagatatgccttatactgctgatggt
gagcctgtggatattgtattgaatcctcttggtgtgccaagtcgtatgaatattgggcag
attcttgaggtgcatttgggattggtaggaaagaatcttggacagcagattcaagagatt
tttcaatctcaatcaaaacaatggataaacgcattacgttcaaagatgattgaaattgct
caggtagttaattccaatgataagacaatggtttcattcttagaaagtatgagtgatgaa
gatttgatgagctatgcacgggattggagtaatggtgtgaagtttgctattcctgtattt
gagggcatagagcaggagaaatttgataaactttttgcgttagcaaagattgatactgat
ggtaaaacagagctttatgatggcaaaaccggcgaaaaaatgcgcgaaagagtgaatgtg
ggttatatgtatatgctcaaacttcatcacttggttgatgaaaaggtccatgcaagaagt
acaggtccttactctttggttacgcaacaacctgtgggtggaaaggctctctttggtggg
cagcgttttggagagatggaagtatgggcattagaagcttatggtgcggctcatacacta
aaagaaatgctcactattaaatctgatgatacagaagggcgaagaggtgcgtataaagct
atcacaaagggtgagcacgtaggggaatctgaaatccctgaaacattttatgttttgaca
aaagagcttcagtcgcttgcccttgatgttaatatctatggtgaagaaaaagacgaaaat
ggtgccgctctgcctattgtgattaaagaagatgaacgccctaaggattttagttcattt
cagctagttctggcaagtccagagaagattctctcttggagtcatggagaggtaaaaaaa
cctgaaacaattaattatcgcacattaaaaccagagcgagatggcttattctgcacgaaa
atctttggtcctgtgcgtgattatgaatgtttatgtggtaaatataaaaaaatgcgctat
aagggtatagtgtgtgaaaaatgtggtgtggaagttacgcgtgcgaaagtgcgccgctca
agaatggggcatatagagcttgttgctcctgtggcgcatatttggtatgtgagttcattg
cctagtcgtattggcactttgcttggtgtgaagatgaaagatttagagcgagtattgtat
tatgaagcatatattgtaaagacaccgggcgaggcattctatgataatgaaggcacaaaa
cctattttaaaatatgatgtacttaatgaagagcaattccaaagcattaatcagcgattt
gaacatactggatttgtcgcacaaatgggtggagaggcgattaaggagctacttgaagaa
ttagacttaatggtgcttctcagtgcattgcgtgaggagattaatctcactaattctgaa
gcaaagaaaaagacgattgttaagcgtttgaaagtagttgaaagctttatcaattcaggt
aatcgtccagagtggatgatgctcaccattctgcctgtgcttccaccggatttacgtcct
ttggtggcacttgatggtggaaaatttgccgtaagcgatgtgaatgatctttatcgccga
gtaattaatcgtaaccaacgcttaaaacgtcttattgagcttgattcgccagaaattatt
gtgcgcaacgaaaaaagaatgcttcaagaagcggttgatgcgctttttgataatggaaga
aatgctaatgctgtaaaaggtgcaaataagcgtcccctaaaatccctttctgaaattatc
aaaggcaagcaaggacgctttagacagaacttgctcggtaagcgtgtggatttctctgga
cgtagcgtgattgtggtaggaccaaacttaaaaatggatcaatgtggattgcctaaaaat
atggctttagagttatttaagccgcatttatttgctaagttagaagagaagggctatgcg
actacacttaaacaagctgtgaaaatggtaagccagaagacaaatgaagtatgggaatgt
ttgcaagaaattgttaatggctatcctgtgttgcttaatcgtgcgccaaccttgcataag
caatccattcaggcattccacccaaaacttattgatggcaaggcgatccagttacatcca
cttgtgtgctctgcgtttaatgcagactttgatggtgaccaaatggcagttcatgtgccg
ctttctcaagaggctattgcagaatgtaaggtgcttatgttaagctctatgaatattttg
ctacctgctagtggtaaagctgtggcagtgccaagccaagatatggttttgggcttgtat
tatctctccttagaaaagaaaggtgtaaaaggggaacataaagtttttgcaagtattgat
gaaatctttatggctattgagatgggtgagcttgatatcaatgcgcgtattaaaactgtg
cataaacgccgtgtgattgacacaacggctgggcgtatgattctaagttctatcttacct
gattttgtgccacttagtctttggaatcagacaatgaagaaaaaagatataggtatattg
attgattatgtatataaagaagggggcttgggtattacggcaacttttcttgataatctt
aagaatcttggctttagatacgcgacaaaagcaggtatttctatttctgcagcggatatt
attattcctcacgataaagcaaaaatgatagatgatgccaaaaaagagattaagcgcata
cagggcgagtttgagcaaggacttcttactgcacaagagcgatataataagagtattgat
atttggacagaaacgagcgaaaaaatgggtaaattgatgatggagaaagttaaaaatgat
aaagaaggctttaactctatctatatgatggcagattctggtgcgagaggtagtgaggca
cagattcgccaactttcggcgatgagagggctaatggcaaaacctgatggcacgattatt
gaaacacctattacttcaaattttaaagagggtttgaatgtgctagagtattttaactca
acgcacggtgcgagaaaaggtctagctgatactgccttaaaaactgctaatgctggttat
cttacaagaaagcttattgatgtgagccaaaatatgaaagttactattgaggattgtggc
acgcacgagggcgttgagattacggatattacggtgggtagcgatatgattgaaccactt
gaagagcgtgttgtaggacgtgtgctagcacgtgatattatcgatcctattgctaatgag
attctgcttagtgaaggtgtattaatcgataatgcgatggcaagacgtattaaagaggca
aatgttaagtctgtgatgatacgcacccctgtaacctgtaaagctcctaagggtgtgtgt
gcgaaatgttatggattgaatcttggcgaatctaaaatggtaaaacccggtgaggcagta
ggggtgcttgccgcacaaagtatcggtgaacccggcacacagctgacattaagaacattc
cacgttggtggaacagcaagtagaagcacagaagagaagcaaatcatagctaagaaagag
ggctttatccgctatcataatatccgcacttacactaatagtaaggggcaaaagattgtg
gcaaatcgcagaaatgcggcgattttggttgttgaaccacgtattaaagcggaatttgat
ggagaaattcgagtagagagtgttcatgatgaagtgcatattactattgtgggtgataaa
aaacattctgttacgcatcgcttaagaaaagatgaagtagccaaacaaaatgaacttgcc
ggtgtagcagggaagattgagggtaaattgcttgtgccgcacgagagtggctataaggtc
aaagcgggcggcagtgtagttgatattattatggatagctggaatgtgcctacacggatt
ccttatggaagtgaattgaaagtggaggataatgcacccatttcccaaaaaattactgct
aaagaaaaaggtgttgtgaaattttatacacttcgctctgatacgcttgaacgtaatcac
aatgtcaaggcaggtatggttgtgaatgaaaaaggtatgtttgccgttattgcagaccaa
aatgatagagaggcaatccgccattatattgcgcgaacctctaagattcttgttgatgac
aatagtgaagtggatatcaatacattgatttctgaacctacttcaagtgagcagattgtg
gtggctgaatgggatgcttatagtgagccaattattgccgaccaagcaggtgtagtatct
tttagggatgtggttgcagggctaactgtaagcgagcaagaagacgaaaatacgcaccaa
aagaattttgttattaatgaatatgtgcccgcaggctacaagccgatgattgttgtaacg
acaaaagaaggtaaggaaatggcttatcgcttagaatctcgtacttctattgctgttaat
gatggagataaggttgaagtggcagatattatcgctaaagtacccaaggcattagcaaaa
tctaaggatattacaggtggtcttccgcgtgtaacggaattatttgaggcaaggaaacca
aaagataccgctattctttctgaacttgatggaacagtgagctttggcaagcctatgcga
ggtaaggagcgtattattattacatcagctgatggacgagtggcagaatacttggtagat
aagaataaaaagattcttgtacatgaacaggagtttatccacgccggagaagcgatgaca
gatggtgttgtctcaagccacgatattttacgcattagtggggagaaagaacttcacaag
tatattgtgagtgaagtgcagcaggtatatcgccgacagggtgtaagtattgccgataag
catatagaaatcattgtgtctcaaatgctccgccaagtgaagattgttgatagtggtaat
acaaagtttattgcaggtgatttagtaagcaagcgacattttaaagaggaaaatgagaga
atcttacgtatgggtggagagccagcgatagctgaacctgtccttcttggtattactcgt
gcggctattggaagtgattctattatttcagcggcttcattccaagaaacaacaaaagtg
cttacagaggcaagtatcgcagctaaaaaagatacacttgatgacttaaaagaaaatgtt
gtgcttggacgtatgatacctgtgggaacaggcttgtataaaaataaaaagttctcttat
aaaggcgacgagcaagaatactattgtgatagtgaggaagaatag

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