Helicobacter mastomyrinus: V3I05_01920
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Entry
V3I05_01920 CDS
T11030
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hmy Helicobacter mastomyrinus
Pathway
hmy00541
Biosynthesis of various nucleotide sugars
hmy01100
Metabolic pathways
hmy01250
Biosynthesis of nucleotide sugars
Module
hmy_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
hmy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
V3I05_01920 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hmy01005
]
V3I05_01920 (rfaD)
Enzymes [BR:
hmy01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
V3I05_01920 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hmy01005
]
Core region
V3I05_01920 (rfaD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
Ldh_1_N
Motif
Other DBs
NCBI-ProteinID:
XAM18461
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All DBs
Position
complement(385768..386769)
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AA seq
333 aa
AA seq
DB search
MKYIYDDLVEKKILITGGAGFIGSNLAMYFQKHHPNAQVYVFDKFRDGELFPSGNPTSLG
HFKNLIKFKGNIIVGDITNTRDLQKLKDYDFDVIFHQAAISDTTVQNQELVMKANYEAFL
HLLELANSSQAMMIYASSAGTYGNSPAPNIVGSGEIPENVYGYSKLCMDNYVRKILESDP
SCPIIGLRYFNVYGNREFHKGKTASMILQLSLQALEHKKVRLFKHGEQKRDFVFIKDVVQ
ANVKALESAKSGIYNVGSGEARSFNDIVACLKEHLGDFEIEYFENPYSFFQTHTEADISA
TKEHLSYTPRFNLEQGIEAYMKEIQNIFATLRR
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatatttatgatgatttagtagaaaagaagattcttattaccggtggggctgga
ttcatcgggagtaatcttgcgatgtattttcaaaagcaccaccccaatgctcaagtttat
gtgtttgataaattccgtgatggtgagctattccctagtgggaatcctacatctctagga
cattttaagaatcttattaaatttaaaggcaatatcatcgtaggggatattactaatacg
cgagatttgcaaaagctaaaagattatgattttgatgtgatttttcatcaggctgctata
tctgatactaccgtgcagaatcaagagctagtgatgaaggcaaattatgaggcattcttg
catttgcttgagcttgctaatagctctcaagcaatgatgatttatgcctcatctgcgggg
acttatggtaattctcccgcgccaaatatcgtaggtagcggtgaaatacccgaaaatgtc
tatggctattctaagctttgtatggataattatgtgagaaaaatccttgagagcgaccct
tcttgccctattataggcttgcgctattttaatgtttatggaaatagagaatttcataaa
ggtaaaacagcctctatgattttgcagctttccctccaagccttagagcataagaaagtg
cggctttttaagcacggcgaacaaaaacgtgattttgtatttatcaaagatgtagtccaa
gctaatgtcaaagccctagaatctgctaaaagtggtatttataatgtcggcagtggcgag
gcgagaagctttaatgatattgtggcttgtcttaaagagcatttgggggattttgaaata
gaatattttgagaatccttatagctttttccaaacgcacacagaagcagatataagtgct
acaaaagaacatctctcttatacgccacgatttaacctagagcaagggattgaagcatat
atgaaggagattcaaaatatttttgcaactctaaggcggtaa
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