Helicobacter mastomyrinus: V3I05_05420
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Entry
V3I05_05420 CDS
T11030
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hmy Helicobacter mastomyrinus
Pathway
hmy03030
DNA replication
hmy03430
Mismatch repair
hmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V3I05_05420 (dnaE)
03430 Mismatch repair
V3I05_05420 (dnaE)
03440 Homologous recombination
V3I05_05420 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmy03032
]
V3I05_05420 (dnaE)
03400 DNA repair and recombination proteins [BR:
hmy03400
]
V3I05_05420 (dnaE)
Enzymes [BR:
hmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V3I05_05420 (dnaE)
DNA replication proteins [BR:
hmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V3I05_05420 (dnaE)
DNA repair and recombination proteins [BR:
hmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V3I05_05420 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
XAM17135
UniProt:
A0ABZ3F414
LinkDB
All DBs
Position
1081414..1085070
Genome browser
AA seq
1218 aa
AA seq
DB search
MSFTHLHLHTEYSLLDGANKIKILAKKIRELGMSSVAVTDHGNMFGTLDFYVTMKEEGLN
PIIGIEAYIHNGDVLNDKNVKQRFHLCLFAKNEVGYKNLMYLSSQSFIQGFYYYPRINKA
LLRERSEGLVCSSACLQGEVNWQLNINNPRNVRYGAKGYEVAKEAVLEYKDMFGDDFYLE
IMRHGIADQFFIDEQILRLSKECGVKVIATNDTHYTLQEDSSAQEIAMCVAMGKTLNDKD
RLKHSVKEFYIKSPEQMQRLFCDIPEVIANTQEIAQKCRLELNLKNIEIRNKHTGEVLLS
NTPATPPTFKNTQDYALKENLPQILNCPLGSIDDAAYFAYKCRQGLDERLEHIPENLHTQ
YKERLEQEINVINTMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVAYSLKITNID
PLKYGLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKYNVAQVITFGSLLAKG
VIRDVARVLDMPYNDADAFAKLIPNELGITLTKHIGKDGQEKDGAWEKEPKIRELVESNA
LAKQVWNYAVLLEGLKRNAGTHAAAIVIDSQEELWNKVPLYTNDKMNGVATQYSMNWLEP
VDLIKFDFLGLKTLTVIDDAIKLIKKRYGKAIDFSIMEMEDSKVYESIQSGNTLGLFQIE
SEGMQALAKKLKPSTFEDVVAMLALYRPGPMESGMLDDFIDRKHGRASINYAFNSLESIL
KPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKIDEMLRLKKEFADGAQKQGYD
RAKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLTSETSKIESV
AKYIDEVKSLNIDIVPPHVNISENDFGVGEFEGEKKIIFGLSAIKGLGDAPIENIIQERE
KNGAYKSLEDFIARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLENIDVLCEKGREKDK
AKDMIHNSLFSSDDVEINIYLSIQDRGEYDVKTLLDYEYECMGIYVSGHPLDDFKEQIQS
IKGIVKSIDLENLEVDSSCMLVGKVLSIKRRISKKSGKPFGSIEFLDYGGSMEIMVFEKQ
LESLEKIDLQEPIALKCKVEDKEDRLNFRILKILTLREAKKEEVETIFKKTDEKSEDEII
PIDMSVAQVDMCMPLCVVVDTQSVQDGILEKLKAHAQSLKGEHELHLRIKDDHFGHTFVS
NLKVHSSIKEVFRELEWQ
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcacacatttacatttacatacagaatattccctccttgatggggcaaataag
attaaaattttagcgaaaaaaatccgtgaattaggtatgagctcagtggcagtaactgac
cacggcaatatgtttggcacacttgatttttatgtaacaatgaaagaggaggggctaaat
cctatcattggcatagaggcatatatccataatggcgatgtgctgaatgataaaaatgtc
aaacagcgatttcacctttgcttgtttgcgaaaaatgaagtgggctataagaatcttatg
tatcttagctcacaatcttttattcaaggattctactactatccacgtattaataaggca
ttgcttagggagcgaagcgaggggcttgtatgttcttcagcgtgtttgcaaggagaggtg
aattggcagcttaatatcaataacccacgtaatgtccgctatggcgcgaaaggctatgaa
gtagcgaaagaagctgtgctagaatataaggatatgtttggcgatgatttttatttagag
attatgcgacacggcattgccgatcagttctttatcgatgagcagattcttaggctaagc
aaggaatgcggggtaaaggtgattgccaccaatgatacgcactataccttacaagaagat
tcaagcgcacaggaaattgctatgtgcgtggcaatgggaaaaacgctcaatgacaaagat
aggctcaagcattctgtgaaagaattttatatcaaatcgcccgagcaaatgcaaaggctc
ttttgcgatatacctgaagtgattgcaaacacacaagaaatcgcgcaaaaatgccgctta
gagctaaatcttaaaaatatagagattagaaataagcatacaggggaagtgctattatct
aatacccccgctacgccgcctacctttaaaaacacgcaagattatgctttaaaagaaaat
ctcccccaaatactcaattgccctttaggatctattgatgatgcggcgtattttgcttat
aaatgtaggcaggggctagatgagcgtctagagcatatccctgaaaatttgcatacgcag
tataaagagcgtctagagcaagaaatcaatgtgattaatacgatgaaattcccgggctat
atgcttattgtatgggattttgtgaattttgctaagcaaaatggcattcctgtgggtccc
gggcgtggctctgcggcgggaagtcttgtggcgtattcgctaaagattactaatattgac
cctttaaagtatggtttgctttttgagcggtttttgaatcctgagcgtgtgagtatgcct
gatattgatatggacttctgccaacgtagacgtggtgagatgatagaatatgtagcaaat
acctatggcaaatataatgtagcacaagtcattacctttggttcgcttttggcaaagggc
gtgatacgtgatgtcgcgcgtgtgcttgatatgccctataatgatgcagatgcgtttgca
aagcttattcctaatgagcttggtattaccctgactaaacatataggcaaggatgggcag
gagaaagatggtgcgtgggagaaagagccaaagattcgggagttggttgagagtaatgct
ttagcaaaacaagtgtggaattatgcggtgcttttagagggattaaaacgcaatgcaggg
acacacgcggcggctattgtgatagattcacaagaggagctatggaacaaagtgccgctt
tataccaatgacaagatgaatggtgtggctacgcagtattctatgaattggcttgagccg
gtagatttgattaaatttgactttctagggctcaagacgcttaccgtgattgatgatgct
attaagcttattaaaaagcgatatggcaaggcgattgattttagcattatggaaatggag
gattctaaggtttatgagagtatccagagtggtaatactctagggctattccaaatagaa
tctgagggtatgcaagcgttggctaaaaagctaaagcccagcacatttgaagatgtcgtg
gcgatgcttgccctctatcgtcccggtcctatggaatcgggtatgcttgatgattttatt
gaccgcaaacacggcagagcgagtatcaattatgcctttaactcgctagagtcgatacta
aagcccacttatggtgttatcgtctatcaagagcaagttatgcaaatcgtgcaaactatc
ggtggattctcacttggcggggcggatttagtccgtcgagcgatgggaaaaaagaagatt
gatgaaatgctaagactcaaaaaagaatttgccgatggggcgcaaaagcaaggctatgat
agggctaaggcggaggatttatgggagcttattgttaaatttgccggatatggatttaat
aaatcgcattctgcggcgtatgcgatgataacctaccaaacagcctatttaaagacatat
tacgaacacgaatttatggcagcaatgctcacaagtgaaacgagcaaaatagaatctgtg
gcaaaatacatcgatgaagtcaaaagccttaatattgacatcgtgcctccacacgtgaat
atttctgaaaatgactttggtgtgggtgagtttgaaggggagaaaaaaattatttttggc
ttgagtgcgattaagggcttgggcgatgcgcctattgaaaatattatacaggagcgtgag
aaaaatggcgcgtataaaagtttagaggattttatcgcacgagtggatttttcaaagctt
actaaacgttcactagagccacttattaaatctggcgggttagataatctaggctattcg
cgcaaaagtatgcttgaaaatattgatgtgctttgtgaaaagggcagagagaaagacaag
gcaaaagatatgattcataactctttgtttagtagtgatgatgtggagattaatatttat
ttatctattcaagatagaggcgagtatgatgtgaagaccttgcttgattatgaatatgaa
tgtatggggatttatgtgtccgggcatccacttgatgattttaaagagcagattcaaagc
attaagggcattgtaaaaagtatagatttagagaatcttgaagttgattcttcgtgtatg
cttgtgggtaaggtgctatctatcaaacgaaggattagtaaaaaaagtggtaagcctttt
ggaagtattgaatttttagattatggcggcagtatggagattatggtgtttgaaaagcag
cttgaaagccttgagaaaatcgatttacaagagccaatagcgcttaaatgcaaggtggag
gataaagaggatagattaaatttccgtatcttaaaaattcttacgttaagggaagcaaaa
aaagaagaggtggaaacaatctttaaaaagacagatgaaaaaagtgaagatgagattatt
cctattgatatgagcgtagcacaggttgatatgtgtatgccgctgtgcgtggtggtggat
acccaaagtgtgcaagatggtattttagaaaagcttaaagcccacgcacaaagccttaaa
ggggagcacgagctgcatttgagaatcaaagatgatcattttggtcatacatttgtaagt
aatcttaaggtgcattcaagcattaaggaagtgtttagggagcttgagtggcaatga
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integrated database retrieval system
