Helicobacter mastomyrinus: V3I05_07405
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Entry
V3I05_07405 CDS
T11030
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hmy Helicobacter mastomyrinus
Pathway
hmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V3I05_07405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmy03019
]
V3I05_07405
03016 Transfer RNA biogenesis [BR:
hmy03016
]
V3I05_07405
Enzymes [BR:
hmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
V3I05_07405
Messenger RNA biogenesis [BR:
hmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V3I05_07405
Transfer RNA biogenesis [BR:
hmy03016
]
Prokaryotic type
tRNA degradation factors
V3I05_07405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
XAM17508
LinkDB
All DBs
Position
1477948..1480068
Genome browser
AA seq
706 aa
AA seq
DB search
MTHIDIALENLKERYSFDYVAKAANGGILYQSGGSVLLASVCTQENEVIEGDFVPLSVQY
IEKSYAKAKFPAGFVKREGKPSEFEILTSRLIDRTLRPLFPKGYAHNTSIVVMVLSYDGM
SDLQVNALNAAACALYVADLPLESLRDNAVCGVRLGRINGTFVLNPTMEQYKESELDLFI
SGRGDELLMIEMKSIRTQKGANELEESEFLNAITLAKNYIVKATKTYHQHFLPHKKPPFA
LVSHARKLDEELYARIFRNYEAHISEALSAMAKSESIKHIHTLISQVAQECDLELEVAQD
YILKAKKQYVREMILDSHKRPDGRGLKDVRPISIKTNILPCAHGSVLFTRGQTQALVSAT
LGSESDMQSYEMLGSKSALKRRFLFHYNFPHFSVGEAGMIGSAGRRELGHGNLARRALES
SIKSEDKTIRLVSEILESNGSSSMASVCGGSLALCACGVEVDSLIAGVAMGLVTEGERYA
ILTDISGLEDHDGDMDFKVAGGYKGISAMQMDIKLGGITQEILSQALYQAKEAREHILGI
MESTRAKIVLNEAILPKSESFMIPPHKIVEVIGAGGKVIKDIIERFSVSIDLARESGMVS
INADNMEKLKAAKAFIMEIVGGGSERVDQESYVAGERFVGRIKKIADFGVFVELPRGGDG
LVHISKITQDRQQRLSDILQGVSELECEILGQNKGKVELGLSKSIL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatattgatattgcattagagaatctaaaggagcgatatagctttgattatgtc
gcaaaggcggcaaatggagggattttataccaaagtggggggagtgtgcttttagcgagt
gtttgcacacaagagaatgaagtaattgagggggatttcgtgcctttgagtgtgcagtat
attgaaaaatcctatgctaaggctaagtttcctgctggatttgtcaaacgtgaggggaaa
ccaagtgagtttgagattctcacttcaaggcttattgaccgcacactgcgcccacttttc
ccaaagggatatgcgcataatacatctattgtggtgatggtgcttagctatgatggaatg
agtgatttgcaagtaaatgctcttaatgctgctgcgtgtgcgctctatgtggcggatttg
cctttagaatctttgcgtgataatgcagtgtgtggagtgcgtttaggacgcataaatggc
acttttgtgctaaatcctacaatggagcaatataaagagagtgagctagatttattcata
tctgggcggggcgatgagcttttgatgattgagatgaagtctatccgcactcaaaaaggc
gcaaatgagctagaggagagcgagtttttaaatgctatcactttggctaaaaactacatt
gttaaggcgacaaagacatatcatcagcattttttgcctcataaaaagcctccttttgcc
ctagtatctcacgcaagaaagctagatgaagaactttatgcacgtatttttagaaattat
gaagcgcatattagcgaggctctctctgctatggcaaaatcagaatccataaagcatatt
cacacgcttatctcacaagtggcacaagagtgtgatttagagctagaagtggcacaagat
tatatccttaaggcaaaaaagcaatatgtgcgagagatgattttagattctcacaaacgt
cctgatggcagggggcttaaagatgtgcgccctattagtataaagactaatattttgccc
tgtgcgcacggaagtgtgcttttcacacgggggcagacacaagcgcttgtgagcgcaact
ctaggcagtgaaagcgatatgcaaagctatgaaatgctagggagcaagagtgcgctcaaa
cggcgatttttgtttcactacaatttcccacattttagtgtaggtgaagcaggaatgata
ggctctgctgggcgcagagaattaggacacggcaatctcgcccgacgtgctttagaatct
agcattaagagtgaggataagactattcggttggtatcagagattctagaatctaatggc
tcaagctcaatggcaagtgtgtgtggcggctcattggcattatgtgcgtgtggggtggag
gtagattcactcattgcgggggtggcgatggggcttgtcacagagggtgagcgatatgcg
attttaacggatattagcggattagaagaccatgatggtgatatggattttaaagttgct
gggggatataagggtataagtgcgatgcagatggatattaagctagggggtattacacag
gagattctatctcaagcgctctatcaggcaaaagaggcgcgggagcatattttaggcatt
atggaatctacgagggcaaagattgtgctaaatgaggcgattttacccaaaagtgaaagc
tttatgatacctccgcataagattgtagaagtgataggtgcgggtgggaaggtgataaaa
gatattattgaacgattttcagtaagcattgatttagcacgtgagagtggtatggtaagc
attaatgcagataatatggagaaacttaaggcggcaaaagcctttattatggagattgtg
ggtggtggaagtgaaagggttgatcaggagagctatgtggcaggagagcgatttgtgggg
aggattaagaaaattgcagattttggggtgtttgtggagctaccacgtggaggcgatggg
ctagtgcatattagcaagattacacaggataggcaacagcgattaagcgatattttgcaa
ggtgtgagcgagctagaatgcgagattctagggcagaataagggcaaggtggagctcggg
ctaagcaaaagcattctttaa
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