Helicobacter mastomyrinus: V3I05_10345
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Entry
V3I05_10345 CDS
T11030
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmy Helicobacter mastomyrinus
Pathway
hmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V3I05_10345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmy03019
]
V3I05_10345
03009 Ribosome biogenesis [BR:
hmy03009
]
V3I05_10345
Enzymes [BR:
hmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V3I05_10345
Messenger RNA biogenesis [BR:
hmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V3I05_10345
Ribosome biogenesis [BR:
hmy03009
]
Prokaryotic type
rRNA helicases
V3I05_10345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
XAM18066
UniProt:
A0ABZ3F7L0
LinkDB
All DBs
Position
complement(2031879..2033486)
Genome browser
AA seq
535 aa
AA seq
DB search
MNHTNTDSGDCLQSENAQGKATQRATHLDNANTQDSIPLEQEGKEKGFEEFGLKEFVLKG
IKEAGFSTPSPVQEQSIPIVLQGKDLIAQAQTGTGKTAAFAIPILNALNRNQEIEALVIT
PTRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKKPKVMIATPGRLLDHLQN
GRIAHFAPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSATMPEPIKALAMNIL
DNPAFVKITPTDITNKDIEQQYYIINEGERDEAVVRLIETQNPTKSIIFTRMKKEADALA
TRLINRGFKAMALHGDMEQWERRESMKAFKQNKIELLVATDVASRGIDISDVSHVFNYHI
PLNPESYVHRIGRTGRAGKKGVAITLATPLEYKELSKIKKMTKAKLTLCEITQEYSDDAF
SQELSQTKVSDKSVMIYEKLKDKIDTTQLCLKLISLHLEKNSNAKIGFSKEQIAQLESVN
EAGGQKRSGKKPHSTKPHRTRKPQGNARDSKAKSKGKKRYDDIDRSQPYTGSIWG
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacacaaatacagatagcggtgattgcctccagagcgaaaacgcacagggcaaa
gctacgcagagggcgacacatttagataatgcaaatacgcaagattctatcccattagag
caagaaggcaaagaaaagggctttgaggaatttggcttaaaggaatttgtgctaaagggc
attaaagaggcgggatttagcacacctagcccagtgcaagaacaaagtattcctattgtt
ttgcaaggtaaagaccttatcgcacaggcacaaaccggtacaggcaagacagcagcattt
gctatccctatccttaatgcactcaatcgcaatcaagagattgaagcacttgtcatcacg
cccacaagggaacttgctatgcaaattagcgaggagattctaaagcttgggcgttttgga
cgtattaaaaccatttgtatgtatggggggcagagcattaagcggcaatgtgatttatta
gaaaagaaaccaaaggtgatgatagccacacccggtaggctgctagaccatttgcaaaat
ggacgcatagcgcattttgcaccacaaatagtcgtgcttgatgaaagcgatgaaatgctt
gatatgggctttttagatgatattgaggagatttttaaattcctacctaatacgcgacaa
actctgcttttttcagctacaatgcctgaacccatcaaggctttggcaatgaatattcta
gataatcccgcctttgtgaaaatcacgcctacagatattacaaataaagatatagagcag
caatattacattatcaacgagggagagcgtgatgaggcggtagtgcgcttgatagaaaca
caaaatcccacaaagagcattatttttacacgtatgaaaaaagaagcagacgcattagcg
acaaggcttattaatcgtggctttaaggcgatggcattgcacggagatatggagcaatgg
gagcgacgagagagtatgaaagcctttaagcaaaacaaaatcgaattgcttgtcgctacc
gatgtagcatcacgtgggatagatattagcgatgtgagccacgtatttaattatcatatc
ccgcttaaccctgaaagctatgtccatcgcattgggcgcacaggacgtgcagggaaaaag
ggagtagctattacccttgctacgccgcttgaatataaagagctaagcaagattaagaaa
atgacaaaggcaaagcttacgctttgtgagattacacaagaatatagcgatgacgccttt
tcacaggagctatctcaaacaaaggtaagcgataaatcagtgatgatttatgaaaagctt
aaagacaagatagacacaacacagctctgtttgaaactcatttcactgcatttagaaaaa
aacagcaacgcaaagattggatttagtaaagagcaaatcgcgcagcttgaatccgtgaat
gaagcaggggggcaaaaaagaagtgggaaaaaaccccatagcacaaagccacatcgcacg
agaaagccacaaggcaatgctagagatagcaaggcaaaaagcaaaggcaaaaagcgatat
gacgatattgatagaagccagccttatacaggcagtatttgggggtag
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