Halothiobacillus neapolitanus: Hneap_0283
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Entry
Hneap_0283 CDS
T01104
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hna
Halothiobacillus neapolitanus
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hna03019
]
Hneap_0283
Enzymes [BR:
hna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Hneap_0283
Messenger RNA biogenesis [BR:
hna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Hneap_0283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
FtsK_SpoIIIE
AAA_25
AAA_30
nSTAND3
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACX95146
UniProt:
D0KXD2
LinkDB
All DBs
Position
289695..293879
Genome browser
AA seq
1394 aa
AA seq
DB search
MNSTLNEPQDAAAPQSAPLSTEPADIIDFLRANLAELPLVDQPALSRRLAGAERALQQNR
LDAGRLAELVTAFEASAALLTERRSAELNIDYPAELPVSGQREAIMDLIRAHPVVIVAGE
TGSGKTTQLPKMLLELGFGVKGQIGHTQPRRIAARNVASRLAEELGVTGAGVVGYKVRFS
DQTRASSRVAVMTDGILLAEIHSDPDLLRYDALIIDEAHERSLNIDFLLGIVRRLLDRRP
DFRLVITSATIDTARFARHFAGTDASGEPQPAPVITVAGRSFPVEYRYRSLTAPQNDNDT
ETEEERDLPAAVVAAVDELHAEAQTTGGGDILVFLPGEREIRECAHRLGRHGLRHTEILP
LFARLSAAEQQRIFAQHTGRRIVLTTNVAETSLTVPGILYVIDSGLARIARYSPRSRVQK
LAVEAISQASANQRAGRCGRIAPGVCIRLFDEADYAGRPAFTDPEILRTNLASVVLRMIE
LRLGEPEHFPFIEPPDSRQLAGARRLLFELGALDERQRITPLGRQLARLPVDPTLGRMVL
SNLSKADATSVDILIVVAFLSIQDPRERPADHAQAADQAQQAFRLADSDFAGILALWDQW
HTVVRHENQRKRRDWAKKHFLSYNRLLEWHDLFGQLREQADEIGRVKLPDPLPLPVMTDG
DEAPLRARLDALHQAMLPGLLAQIGLRDEATRTDKNTPKDSRDQRGKKQRTPTIYIGANN
RRFQIFPGSQLAKTQPKWLMSAEIVETTRVYARMNATINPRWIEDMAAHLTTREYSEPRW
DQRGGRVAAFETVKLFGLPIVTKRRIDFGRIDPLGARAIFIRAALVEGEFDSGLKFWRHN
QALIDEIREIEARNRRPDLLIDDQTLFDFYETHLPAEVYDAHTLVRWLKTITPKQPDVLC
MTRDDLLAREPVELDPAGFPDRLSMGAFSLPLAYHFAPGSADDGVTLRLPLAALKQIDAD
RASHLIPGLRREKIEALIRSLPKADRRHFVPAPEFAASVNERVSVDRGGLPAQVAEQLAR
MTGHKITADAFDERRLEPHLRMRFALIDAKQTDPDKQIIDADRDLSALRARHAAAAERAL
VERTRHRLERDDLIDWSFGELPESLTVEELGAELTAYPALIDQGDCAEVRLFDAPERAVL
AHRSGVVRLMLIALGEQIRHLSQYLKQERSLDPARLQYSQWSNTRPLPAFGLTLPQRRDA
AFDQALIARSIAKLAVDALPFIRDESTFRARVERLKPQLDDTVRRLAAQIRTIFAQHQAL
RAKLKGRLPLSQIEAAREIAEQFDLLFYPGMIWNTPQTLLDNLPRYLTAAEKRLEKIDRH
PERDRMLRVQFMPVCARVTDKITATAPTPEAFAALNQLHEQLEEWRVATFAQELARKGAP
GAKEIEQAIKQLSH
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgaattctacgctaaatgaaccacaggatgccgctgccccacagtcggcaccgttatca
actgagccagccgacattatcgattttttacgtgcgaatctggccgagctgccgcttgtc
gatcaaccagcactgtctcgccggttggctggggctgagcgtgccttgcagcagaatcgg
ctggatgcgggtcggctggccgagctggtcacggctttcgaggccagtgcggccttgttg
acggagcggcgttcggcagaattgaacatcgattatcctgcagagctgcccgtcagcggc
cagcgcgaggcgatcatggatttgatccgcgcgcatccggtggtgatcgtggcgggggag
accggttccggcaaaactactcagttgcccaagatgctgctggagctgggctttggcgtt
aaaggccagattggccacacccagcctcggcgcatcgcggcgcgaaacgtggctagccga
ttagccgaagagctgggcgtgacgggcgcgggcgtggtcggctacaaggtgcgtttttcc
gatcaaacccgtgcgagcagtcgcgtcgcggtgatgactgatggcattttgttggccgaa
attcacagcgatcctgatctgttgcgctacgacgcgctcattattgatgaagcgcacgaa
cgcagcctgaatatcgattttctgctcggcatcgtgcgccgcttgctcgatcgtcgtcct
gattttcgtttggtgattacctccgccaccatcgacaccgcccgatttgctcggcatttc
gccggtacggacgcgtcgggcgaaccgcaacccgcgccggttatcaccgtggcagggcgg
agtttcccggtcgaatatcgctatcggtcattgactgcaccacagaatgacaacgacact
gagacggaggaagaacgggatctgcccgccgccgtcgtggctgctgtcgatgaattacat
gcagaggcgcaaaccaccggcgggggcgacattctggtcttcctgccgggcgagcgggaa
atccgcgagtgcgcccaccggctgggtcggcatggtttgcgccatacggagattttgccg
ttgtttgcgcgcctgtccgccgccgagcagcagcgcattttcgcgcagcacacgggccgg
cgcatcgtgctgaccacgaacgtcgccgaaacgtcactcaccgtgcccggcattctttat
gtgatcgattcgggcttggcgcgaattgcccgttacagcccgcgctcacgggtgcaaaag
ctggcggtggaagcgatttcgcaagcatcggcgaaccagcgtgcgggccgttgtggccga
atcgcgccgggggtgtgcattcgcctgtttgatgaggccgattacgctggccgaccggcg
ttcaccgatcccgaaattctgcgcaccaacctcgcctcggtggtgttacgcatgatcgaa
ttgcgtttgggcgagccggagcatttcccgttcattgaaccgcccgattcacggcaactc
gccggtgcccgccgtttgttgttcgaattgggcgcgctcgacgagcgccagcgcatcacg
ccattggggcgccaactggcgcgcttgccggtcgatccgaccttaggcaggatggtgtta
tcaaacttatcgaaggcagacgccacctcggtggatatcctgatcgtcgtggccttcctg
tcgatacaagacccgcgtgaacgcccagccgatcacgcgcaggccgccgatcaagcgcaa
caggcgttccgcttggccgactcggatttcgcgggcattctggccctgtgggatcaatgg
cataccgtggtgcgacacgagaaccagcgcaagcggcgcgactgggcgaaaaagcatttc
ctctcgtataaccggctgctggaatggcacgatctgttcggccagttgcgtgaacaagcc
gatgaaatcgggcgggtgaaattacccgatcctttgcccttgcctgtgatgacagatggc
gatgaagcgccactgcgtgcgcgacttgatgctctgcatcaggcaatgctgcctggtttg
ctggcgcagattggcctgcgcgatgaagccacgcgaacagataaaaacacgccaaaagac
agccgcgaccaacgcggcaagaagcagcgtacgccgacgatctacatcggcgcgaacaat
cgccgcttccagattttccccggctcccaactggccaaaacccagcccaaatggcttatg
agcgcagaaatcgtagagacgacccgcgtctacgcgcgcatgaacgccaccatcaatccg
cgctggatcgaggatatggccgcgcatctgaccacgcgtgaatacagcgaaccgcgctgg
gatcaacggggcggacgcgtggccgcctttgaaaccgtcaaactgttcggcttgccgatt
gtgaccaagcgacggatcgattttggccgcattgatccgctgggcgcgcgcgcgatcttt
attcgtgccgccttggttgaaggggaattcgatagcgggctcaaattttggcgacacaat
caagccctgatcgacgaaattcgggaaatcgaagcgcgtaatcgccgccccgatttgctg
attgatgatcaaaccctgttcgatttttacgaaacccacctgcctgcggaagtctacgac
gcgcatacgctggtgcgctggttgaaaaccatcacgcccaaacagcccgatgtgctctgc
atgacgcgcgatgatctgctggcgcgtgagccggtcgagctcgatcccgcgggtttcccc
gatcggttgtcgatgggcgcgttcagcttgccgctggcttatcacttcgcgcccggcagc
gcggatgatggtgtcaccctgcgtctgccgttggcggcactcaaacaaatcgatgccgat
cgggccagccacctcatccctggtttgcgccgtgaaaagatcgaagcgctgattcgcagc
ctgcccaaagccgaccgccgccatttcgtgcccgcgccggaatttgcagcttccgttaat
gaacgggtgtccgttgatcgtggcggcctgccggcgcaagtggccgaacaactggcccgc
atgacagggcacaaaatcaccgccgatgccttcgatgaacgcaggctggaaccacatttg
cggatgcgatttgccttgatcgacgccaagcagaccgacccggataagcaaatcatcgat
gccgaccgcgatctttcagccctgcgggcgcgtcacgccgccgcagccgagcgtgccctg
gttgagcgcacgcgccatcgactggaacgcgatgacctcatcgactggtcgttcggcgaa
ctgcccgaaagcctcacggtagaagagctcggcgctgaactcaccgcgtaccccgccttg
atcgatcagggcgactgcgccgaagtgcgcctgttcgatgcgccggaacgtgccgtgctg
gcgcaccgctccggcgtggtacgcttgatgcttatcgccctgggcgagcagattcggcat
ttgagccaatacctcaaacaagagcgcagcctcgacccggcgcggttgcaatacagccaa
tggtcgaacacacgccctttgcccgcttttggtttgaccttgccccaacggcgcgatgcc
gcgttcgatcaggcgttaattgctcgcagcatcgccaaactcgccgtagacgccttaccc
ttcattcgagacgagtccacattccgtgcccgcgtcgaacgattgaagccccaactggat
gatacggtgcgccgattggcagcccaaatacgcacgatcttcgcgcaacatcaggccctg
cgcgccaaactcaaaggccgcctgcccctgtcgcaaatcgaagccgcgcgcgaaattgcc
gaacaattcgatttattgttctaccccggcatgatctggaacaccccgcaaaccctgctc
gacaacctgccgcgctacctcaccgccgctgaaaaacgcctagaaaaaatcgaccgccac
cccgaacgcgaccgcatgttgcgcgtacagttcatgcccgtctgcgcccgcgtcacagac
aaaatcaccgcaaccgcacccaccccggaagcgttcgcagcactcaatcaattgcatgaa
caactcgaagaatggcgcgtcgccaccttcgcgcaagaactggcccgcaaaggcgcaccc
ggcgccaaagaaatcgagcaagccatcaaacaactttcgcattaa
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