Halothiobacillus neapolitanus: Hneap_0316
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Entry
Hneap_0316 CDS
T01104
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hna
Halothiobacillus neapolitanus
Pathway
hna03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hneap_0316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hna03021
]
Hneap_0316
03400 DNA repair and recombination proteins [BR:
hna03400
]
Hneap_0316
Enzymes [BR:
hna01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hneap_0316
Transcription machinery [BR:
hna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Hneap_0316
DNA repair and recombination proteins [BR:
hna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Hneap_0316
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ACX95179
UniProt:
D0KXG5
LinkDB
All DBs
Position
324553..328719
Genome browser
AA seq
1388 aa
AA seq
DB search
MSYSFTEKKRIRKEFGHRADILPVPYLLATQVESYKSFLQSGVPAKGRTNAGLHAALSSV
FPIRSHSGNAEIAYVDYYFGEPAFDVRECQIRGLSYGAPLRVKMRLVIYDRDAPAGSKVV
KDIREQDVYLGEIPLMTESGTFVINGTERVIVSQLHRSPGVFFDHDKGKTSSSKKILFSA
RIIPYRGSWLDFEFDQKDILYARIDRRRKIPASIILRALGYTNQNMLDIFFDHDEFHIDK
DGGLALTLVADRLKGTDAAFDIDINGENLIKTGKRITARHVRELVAAKVTSLPVPVDFVV
GRVLASDVIDTSTGEVLAQGNEELTTELVAKLAKAGITQFKTLYFNDVDRGPFMSLTLRA
DPSTTPLEAMVEIYKMMRPGEPPTKDSAEALFHGLFFTEDRYDLSEVGRMKFNRRIEREG
DVGPGVLYDGKYFTTRAAQGDEAAKQLLKEQGGVSDILDVMKELIDIRNGNGKTDDIDHL
GNRRIRSVGEMTENVFRIGLVRVERAVKERLTQAESEGLTPQDLINAKPVAAAIKEFFGS
SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPN
IGLINSLATYARTNGYGFLETPYRTVKDGVVSKEVDWLSAYEEEKFTIAQANAPLDDNGV
LQGNLISVRRAGEFMLASPEEIQYMDVSPKQIVSIAASIIPFLEHDDANRALMGSNMQRQ
AVPTLRADKPLVGTGMERVVATDSGSCVVARRGGVVDRVDAARVVVRVNAEEASQGDVGV
DIYNLTKYTRSNQNTCINQTPLVKAGDVIAKGDVLADGPSVDMGELALGQNILCAFMPWN
GYNFEDSILLSERVVREDRLTTIHVEELNCIARDTKLGAEEITADIPNVAESLLNKLDAA
GVVHVGAEVRPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPPGMEGTV
IDVRVFTRDGIEKDSRARAIEEADLEAVRKDLKDRMRIIEGDILARVKSVLVNQVAVGGP
GVKAGSKITAAQLEKIEPSKWLEIRVEGEEAAQAMEEYIAQLAQAQVDIDKRFEDKKKKI
QQGDDLAPGVLKMVKVYVAVKRRIQPGDKLAGRHGNKGVVSMIVPEEDMPYMENGQPVDI
CLNPLGVPSRMNIGQILETHLGFAARGLGVKIEEMLKLERAKALIELRAFLDKVYNYKSD
KPVDLDALSDDELIELARNLKKGVPMATPVFDGAVEDEIKYMLELAGLPTSGQVQLYDGR
SGEPFERTTTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEMLTVKSDDVNGRNKMYKNIVDGDLKMDAGMPESFNVLLKEIRSLAIN
VELEQGKE
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcatttactgaaaagaagcgaatccgcaaggaatttggccaccgtgccgat
atcctgccggtaccgtatttactggcgactcaggttgagtcttataagtcattcttgcag
agtggtgttcctgccaaagggcggacgaatgccggactgcatgccgcgttaagttctgtt
ttcccgatccgcagtcattcaggtaatgctgaaattgcgtacgtggattactactttggc
gaaccggctttcgatgttcgcgaatgccagattcgtggtttgagctatggtgcacccttg
cgcgtgaagatgcgtctggtcatttacgatcgtgatgcaccggctggctccaaggtcgtc
aaggatattcgtgagcaggatgtctatctgggcgaaattccattgatgaccgagagcggt
acgtttgtcatcaacggtaccgagcgggttatcgtgtctcagttgcaccgttcgcccggt
gtgttctttgatcacgacaagggtaaaacctcaagttccaagaaaatcctcttttctgcg
cggatcatcccctaccgtggttcgtggctagatttcgaattcgaccagaaggatattctg
tacgcgcgtattgaccgtcgccggaagattcctgcgtcgatcatcctgcgtgcactgggt
tacaccaaccagaacatgctcgatattttcttcgatcacgatgagttccatatcgataaa
gacggtggtctggctctgacgctggtcgctgaccgtctgaaaggtaccgatgcggcattc
gacatcgatatcaatggtgaaaacctgatcaagacgggcaaacgcatcaccgcgcgtcac
gtgcgcgaattggtcgccgccaaggtcaccagcctgccggtgcctgtggatttcgttgtt
ggtcgtgtgcttgcttcggacgtgattgacacgtcaaccggtgaagtgctcgcacaaggt
aatgaagagttgaccaccgagttggtggcaaaacttgccaaggccggaattacccagttc
aaaacgctctatttcaatgatgttgatcgtgggccgttcatgtcgctgacattgcgcgcc
gatccttcgaccacgcctcttgaagcgatggtcgaaatctacaagatgatgcgtccgggc
gaaccgccgacgaaagattctgccgaggcgttgttccatggcctgttctttacggaagat
cgttacgatctttccgaggtgggccggatgaagttcaatcgccgcatcgagcgcgaaggc
gacgtcggtcctggcgttctgtatgacggcaagtattttacaacgcgcgctgcgcaaggc
gacgaggctgccaagcaattgctcaaggagcagggcggcgtttcagacattcttgatgtc
atgaaggaactgatcgatatccgtaacggcaacggcaagacagatgacatcgatcacctg
ggtaaccgccgtatccgttccgtgggcgagatgacggaaaacgtcttccgtatcggtttg
gttcgtgttgaacgcgcagtcaaagagcgcctcacgcaagccgaatctgaaggcctgaca
ccgcaggatctgatcaatgccaagccggtggctgctgcgatcaaagagttcttcggctcc
agccaattgtcccagttcatggatcagaacaacccgctgtcggaaattacgcacaagcgt
cgtatttcagcattgggtccgggtggtctgactcgtgagcgcgcgggttttgaagtgcgt
gacgttcacaccacgcactacggtcgcgtgtgcccaatcgaaacgccggaaggcccgaac
atcggtctgatcaactcattggcgacctatgcgcgtaccaatggctatggcttcctcgaa
acaccttaccgcaccgtcaaagacggcgtggtcagcaaggaagtcgattggttgtcggcc
tatgaggaagaaaagttcaccatcgctcaggctaacgcgccgctcgatgacaacggcgtt
ctgcaaggcaatctgatctccgtccgtcgcgccggtgagttcatgctcgccagccctgaa
gaaattcagtacatggacgtatcaccgaagcagatcgtgtccatcgcggcttccatcatt
ccgttcctcgagcacgatgatgcgaaccgcgccttgatgggttcgaacatgcagcgtcag
gcagtgcctaccctgcgtgctgataagccgttagtcggtacgggcatggagcgcgttgtt
gctaccgattccggttcgtgcgtcgtcgcacgccgtggcggtgtggtcgatcgtgtggat
gcagcgcgtgtcgtggttcgggttaatgccgaagaggcaagccagggcgacgtgggcgta
gatatctacaacctcaccaaatatacccgttcgaaccagaacacctgcatcaaccagacg
ccgttggtcaaagcgggtgacgtgattgccaagggcgatgtgcttgctgatggtccgtcg
gtcgacatgggtgaactggcactgggtcagaacatcctgtgtgcgttcatgccgtggaac
ggttacaacttcgaggattcgatcctgttgtccgagcgcgttgtgcgtgaagatcgcctg
accaccatccacgtggaagagttgaactgtatcgcgcgtgacaccaagttgggtgccgaa
gagatcacagctgatatcccgaacgtggccgaaagcctgctgaacaaactggatgcagcc
ggtgtggtccacgtcggcgcggaagtccgtccgggcgacatcctcgtaggcaaggtcaca
ccgaaaggtgagacccagctcacgccggaagaaaaacttcttcgtgccatcttcggtgag
aaggcctccgatgttaaagacacatcgttgcgtgttccgccgggaatggaaggtacagtt
atcgatgtgcgtgtcttcactcgcgacggtatcgaaaaagacagccgtgcgcgtgcgatt
gaagaagccgatctcgaagccgtgcgcaaggatctgaaagaccgtatgcggatcatcgaa
ggcgatattctcgctcgtgtgaaatccgttctggtcaatcaggtcgccgtgggcggtcct
ggcgtcaaagcaggtagcaagatcacggctgctcaactcgagaagatcgagccgagcaag
tggctggaaattcgcgttgaaggcgaagaagccgctcaggcgatggaagagtacatcgct
cagttggcacaggctcaagtcgatattgacaagcgcttcgaagacaagaagaagaaaatt
cagcaaggcgatgatctggctcctggcgtgctgaagatggtcaaggtctatgtagccgtt
aagcgtcgcatccagccgggtgacaagctggccggtcgtcacggtaacaagggtgtggtc
tccatgatcgtgcctgaagaagacatgccgtacatggaaaatggccagccggtcgatatc
tgcctcaacccgttgggcgtaccgtcgcggatgaacatcggtcagattcttgaaacccat
ctgggcttcgcggcgcgcggtctgggtgtgaagatcgaagagatgctgaagctggaacga
gccaaggcattgatcgaactgcgtgcattcctcgataaggtatacaactacaagtctgac
aagcctgtcgatcttgatgcattgagtgatgacgagttgatcgaactggcgcgcaacctc
aagaagggcgtgccgatggctacaccggtcttcgatggtgcagttgaggacgaaatcaag
tacatgctggaactggctggtttgccgacctcgggtcaggtacagctctacgacggccgc
tcaggcgaaccgttcgagcgcaccacgaccgtgggatacatgtacatgctcaaactcaac
cacttggttgacgacaagatgcatgcccgttcgactggtccttactcacttgttacccag
cagccgctgggtggtaaagcgcagttcggtggtcagcgcttcggggagatggaagtctgg
gcgctggaagcctatggcgcagcgtacacactccaggaaatgctcaccgttaagtcggat
gatgtgaacggtcgtaacaagatgtacaagaacatcgttgacggagatctcaagatggat
gccggtatgccggaatccttcaacgtactcctcaaggagattcgttcgctcgcgatcaac
gtcgagctggagcagggcaaagaataa
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integrated database retrieval system
