Halothiobacillus neapolitanus: Hneap_0461
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Entry
Hneap_0461 CDS
T01104
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hna
Halothiobacillus neapolitanus
Pathway
hna02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hneap_0461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hna03021
]
Hneap_0461
Transcription machinery [BR:
hna03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hneap_0461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Pyr_redox_3
Sigma70_r4_2
ANC1_spectrin
Motif
Other DBs
NCBI-ProteinID:
ACX95317
UniProt:
D0KXZ4
LinkDB
All DBs
Position
complement(485265..487091)
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AA seq
608 aa
AA seq
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MYEDQQASIKSLIARGREQGYLTYAEISDHLPEALVDADQIEDIIGMIQEMGISVSEVAP
DGDDLGLADESRAASDEDATEEAVAVLASQVDAEFGRTTDPVRMYMREMGTVDLLNRQGE
IEIAKRIEEGLIDVTRALAFYPPTIETLLEHYARIEAGDLRMQDVIVGIIEPEVEIPEDA
EEKPLDVAEGKASNTDDEDEDEEDDTEEEAVVDNTLDPELVRTHLMEIKRLAENLDERSP
EYLASLADQLVQLKLNPAFNEKLLEQIRQAIARIRLLEKQIMHQAVDKGGLKRETFIEAF
RSNESDIGWVKVATKGKPTAKFSQVQPEIERLQKRLNTVARDSKLTVAQTREVHRLITLG
EAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMD
LPEDKIRKVLKIAKEPISMETPIGEDDDSNLGDFIEDQSAISPMDSATNASLSEIVREIL
ASLTPREAKVLMMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLR
SFIEMNID
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaagaccagcaggccagcatcaaatcactcatcgctcgcggccgggaacagggc
tacctgacctacgcggaaatcagcgaccatttgcccgaagcccttgtcgatgccgaccag
atcgaagacatcattggcatgattcaggaaatgggcatttccgtttccgaagtcgcaccc
gatggcgatgacctcggcctcgccgacgaatcccgcgctgccagtgacgaagatgccacc
gaagaagcagttgccgtccttgcctcgcaagtcgatgccgaattcggccgcaccactgat
cccgtgcgtatgtacatgcgcgagatgggtacggtcgatctgctcaatcgccagggcgaa
attgaaatcgccaaacgcatagaagaaggcctgatcgacgtcacgcgtgcgctggccttt
tatccaccgaccatcgaaaccctgctagagcactacgcccggatcgaagccggcgacttg
cggatgcaggatgtcatcgtcggcattatcgaacctgaagttgaaatccccgaagatgcc
gaagaaaaaccgttggacgtcgccgaagggaaagcaagcaacacagacgacgaggacgag
gatgaagaagacgataccgaagaagaagcggtcgtcgacaacacgctcgaccctgagctt
gtccgaacccacttgatggaaatcaagcgcttggccgaaaatctcgacgagcgctcaccg
gaataccttgccagcttggccgaccaattggttcagctcaaactcaacccggcattcaat
gaaaagctgcttgaacagattcgtcaggccattgctcggattcgactgctcgaaaagcag
atcatgcatcaagccgtggacaaaggcggcctcaagcgcgaaacgttcattgaagcattc
cgcagcaacgaatcggatatcggctgggttaaagtggccacaaagggcaagcccactgcg
aaattcagccaagtacagccggaaatcgaacgtctgcaaaaacgcctgaacaccgtcgcc
cgcgacagcaaattgactgtggcgcaaacgcgtgaagtccatcgtcttatcaccttgggc
gaagccaaggcgcggcgcgcgaagaaggaaatgatcgaagccaacctgcggctcgtgatt
tccatcgccaaaaaatacaccaaccgtggcctgcaatttctggatttgattcaggaaggc
aacatcggtctgatgaaagcggtcgacaaattcgaataccgccgcggctacaagttctcg
acctacgccacgtggtggattcgccaggccattacccgttcgattgccgaccaagcgcgc
accatccgtattccggtgcacatgatcgaaaccatcaacaagctgaaccgtattagccgt
cagatgttgcaggaaatgggacgggaagccacgccggaagaactggccgagcggatggac
ctgccggaagacaagatccgcaaggtgctcaaaatcgccaaggaaccgatttccatggaa
acgccgatcggcgaagatgacgattccaacctgggggatttcatcgaagatcagagcgcg
atttccccgatggactcggcaacaaacgctagcctgtccgagattgtgcgtgagattctg
gcatcccttaccccgcgtgaggcaaaggtcttgatgatgcgtttcggtatcggtatgaac
accgaccacacgctggaagaagtcggcaagcaattcgatgtcacccgtgaacgcatccgc
caaatagaggccaaggcactgcgcaaactgcgtcacccgtcacgttccgagcggctgcgt
agcttcatcgaaatgaatatcgactga
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