Halothiobacillus neapolitanus: Hneap_1362
Help
Entry
Hneap_1362 CDS
T01104
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hna
Halothiobacillus neapolitanus
Pathway
hna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hneap_1362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hna03019
]
Hneap_1362
Enzymes [BR:
hna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Hneap_1362
Messenger RNA biogenesis [BR:
hna03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Hneap_1362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_22
HEM4
Flavi_DEAD
Amidohydro_1
Motif
Other DBs
NCBI-ProteinID:
ACX96196
UniProt:
D0L0H3
LinkDB
All DBs
Position
1472317..1473726
Genome browser
AA seq
469 aa
AA seq
DB search
MSFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLL
QRLATTPVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQR
DRLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPK
QRQNLLFSATFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPVDRDAKKALLQQL
IVDGNWNQVLVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKLRVL
VATDIAARGIDIDALPHVVNYELPNVPEDYVHRIGRTGRAGAGGEAVSLVCVDEHKLLAD
IERTIRQKLERVIVPGFEPDPNARPEPLRKPQAARQPRRDFPPRSAQGHGGQGHNAQAPR
SAGSQRDGQPRSAGSAAAGNRPQRDGGRDTGNRSRPAGSGQRRRPSGNV
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctgaactgggcctgatgcccgagttactgaccgcgctcgacgccgtcggc
tatacaagtcctacccccatccaacgtgaagcgatcccgatcgtcttgtccgggcgggat
cttctggccgcagcccaaaccggcaccgggaaaaccgccggcttcaccttgccattgttg
caacgactcgccaccacgcctgtcttgcacccggcacccaaacaccgcattcgtgcactc
gtgctgacacctacgcgcgaactggcttcgcaggtagaagaaagcgtcaagcagtatggc
caaaagttaaaattgacctcgatggtgattttcggcggcgtgaacatcaacccacagcgt
gatcgtctgcaacgcaaactcgacatcctcgtcgccacgccagggcgcctgctcgatcac
gtcggccaaggcaacgtggacttgggcggcgtggaaattctggtgctggatgaagccgac
cgcatgctcgacatgggatttatccgcgacatcaagcgggtgctcgccctgttgcccaag
caacggcaaaacctgctcttctcggccacctttgcgcctgaaataaaaaccttcgcccag
aatttgctcgacaacccggccaaggtcgaagttgcgccacaggtcaccaccgccgagcgc
gttgagcaacggatttatcccgttgaccgggatgctaaaaaagccctgttacaacagctc
atcgtcgatggcaactggaatcaagtgctggtcttcacccgcaccaaacacggcgcgaac
cgtctggccgaacagctcgacaaggacggtatccccgccatggcgattcacagtaacaag
agccagtctgcccgtgagaaagcgctcggtgcattcaaggccggcaaactgcgcgtcctg
gtcgcaaccgacattgcagcccgtggcatcgatatcgacgccctgcctcatgtcgtcaac
tatgaattgccgaacgtccccgaagactacgtgcatcgtatcggtcggaccggtcgcgcc
ggtgcgggcggcgaagccgtttccttggtgtgtgtggacgagcataaactgctggccgat
atcgagcgcactattcgccagaaactcgaacgcgttattgtgcccggcttcgaaccggac
ccgaatgccaggcccgagccattgcgcaaaccacaggcagcgcgccaaccccgccgcgac
tttccaccacgcagcgctcaaggccatggtggacaaggtcacaacgcccaggcacctcgg
tcagccggctcccagcgggatggtcaaccgcgttcagccggtagcgccgcagcgggcaat
cgcccccaaagagatggcggcagagatacgggcaaccgctcacgtcctgcgggttccggt
cagcgccgtcggccttctggcaacgtgtaa
DBGET
integrated database retrieval system
