Hyphomonas neptunium: HNE_0330
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Entry
HNE_0330 CDS
T00397
Symbol
rpoH
Name
(GenBank) alternative sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
hne
Hyphomonas neptunium
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hne03021
]
HNE_0330 (rpoH)
Transcription machinery [BR:
hne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HNE_0330 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r3
HTH_11
PHA_gran_rgn
DUF3431
Motif
Other DBs
NCBI-ProteinID:
ABI75691
UniProt:
Q0C5D3
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All DBs
Position
complement(324491..325387)
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AA seq
298 aa
AA seq
DB search
MANANAKSSVALSPEQGMSRYLSEIRKFPMLEKNEEFMLARRWHEHEDTEAAEKMVTSHL
RLVAKIAMGYRGYGLPMAEVISEGNVGLMQAVKKFDPDKGFRLATYAMWWIRAAIQEYIL
RSWSLVKLGTTAAQKKLFFNLRRLKGEMQALEEGDLKPEQARLIAEKLNVTETEVYSMNG
RMSGSDASLNVPMGTDGDMEWQDWLADDEPGTAETFANSQELDARMTLLTQAMEDLSERE
RHILTERRLVDEPKTLEELSEQYNVSRERIRQIEVRAFEKLQKAMKRMAKEQGLPMGA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgcgaacgcaaaaagctcggtcgcgctaagccccgaacagggcatgagccgc
tatctgagcgaaatccgcaaattcccgatgctcgagaagaatgaggaattcatgctggcc
cgccggtggcacgagcatgaagacaccgaagcggccgagaagatggtgacctcgcacctg
cgcctcgtggcgaagattgcgatgggctatcgcggctatggcctgccgatggccgaggtt
atctcagagggcaatgtgggcctgatgcaggccgtgaagaaattcgaccccgacaagggc
ttccgcctcgcgacctatgcgatgtggtggattcgcgccgcgatccaggaatacatcctg
cgcagctggagccttgtgaaacttggcaccacggcggcccagaagaagctgttcttcaac
ctgcgccgcctgaagggcgaaatgcaggcgctggaggaaggcgacctgaaacccgaacag
gcccgcctgatcgccgagaagctgaatgtgaccgagaccgaagtttattcgatgaacgga
cgcatgagcggttcggacgcctcgctgaacgtgccgatgggcaccgatggcgatatggaa
tggcaggactggctggccgatgacgagccgggcacagccgaaaccttcgccaacagccag
gaacttgacgcacgcatgaccctgctgacgcaggcgatggaagacctttccgagcgtgag
cgccacatcctgaccgagcggcgcctggtggacgagcccaagacgctggaagagctttcc
gagcagtataatgtcagccgcgagcgtatccggcagattgaagtgcgcgcgtttgaaaag
ctgcagaaggcgatgaagcgcatggccaaggaacagggcctccctatgggggcctga
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