Hyphomonas neptunium: HNE_0401
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Entry
HNE_0401 CDS
T00397
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hne
Hyphomonas neptunium
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hne03019
]
HNE_0401 (hrpB)
Enzymes [BR:
hne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HNE_0401 (hrpB)
Messenger RNA biogenesis [BR:
hne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HNE_0401 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
AAA_19
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABI75491
UniProt:
Q0C562
LinkDB
All DBs
Position
397904..400342
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AA seq
812 aa
AA seq
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MTPSEALPIDEAMPEILRALAAGPRLVLAAPPGAGKTTRVPLALAGLLGAPGVIEGRIIL
LEPRRVAARMAAERMASSLGERVGQTIGLTTRVDRKVSRGTRIEVITDGLFTRRILADQE
LTGIGAVVFDEFHERRLNADLGLALALEVQSILREDLRLLIMSATLDTGAVSRAIDAPVI
ESEGRMYPVETRYLGKSDDRIEDRMPKVIRQALREEPGSVLAFLPGAREINRTAEALTGL
GPDILIAPLYGALSPGEQDAAVSPAPPGKRKIVLATDIAESALTIEGVRIVIDSGLSRVA
EEDLGGLGSRLTTVRASRASADQRRGRAGRTSPGVCYRLWDEAATRGLMAAPTPEILVTD
LSGLALTLAEWGAPDAGALTWMDAPPAGKLKGARAGLIALGALDADGVLTPRGKEMARLP
LPPRLAALVASAPGAPEKALAAEIAAMMGERGMGGDSSDLTQRLQRFRTDGSPRARALKQ
QAKSWGGGETPGGDLAKLLARAWPDQVARRRPGSAGSYLMASGRAAGVQPSDGLAKSDWL
VVADLGGAAKEPRILLGLPVTEAEALASQKTITEERAAFDPKTGKFTARRVKALGAIVLS
EAPLPKPSAEAAATAMLAAIETDGFAAIGAGDVIEETLSRLRILAEAGLIEAPDISPESL
VSGAPVWLKPALKRRGAQLPEDHDVREALVQSLDWPLQEALRNHAPLSLELPSGQSARVD
WLDPRAPLVSARAQAFYGLTEHPKIAAGRVPVTVELLSPGMKPAATTQDLARFWGAGYKD
MAKDMRGRYPKHDWPDDPANARAHEGRTKKRL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaccccttctgaggcccttccgattgatgaggcgatgccggagatcctccgcgcattg
gcggcagggccgcgccttgtgctggccgctccgccgggcgcgggcaagacaacgcgcgtg
ccgctcgctctggcggggctgctgggcgcgccgggcgtgatcgaggggcgcatcatcctg
ctggaaccccgacgggtggccgcccgcatggcggccgagcggatggcgtcctcgctgggc
gagcgcgtcggccagaccatcggtctcaccacccgtgtggaccgcaaagtttccaggggc
acccgcatcgaggttatcaccgatggcctcttcacccgccgtatcctggccgatcaggaa
ctgaccggcattggcgcggtggtgtttgacgaatttcacgaacggcgcctgaacgccgat
ctcggcctggccctcgcgctggaggtgcaatccatcctgcgggaagacctccgccttctg
atcatgtcggccacgctggacacgggcgcggtctcccgcgccattgatgccccggtgatc
gagagcgaggggcggatgtatccggtggagacacgctatctcggcaagtccgacgaccgg
atcgaggaccggatgcccaaggtgatccgccaggccctgcgagaggagccgggctctgtg
ctggccttcctgccgggcgcgcgggagatcaaccgcacggccgaagcgctgacagggctc
gggccggacatcctcatcgctccgctctatggcgcgctttcgccgggcgaacaggacgct
gccgtctcgcccgccccgccgggcaagcggaagatcgtgctggcgactgacattgccgaa
agcgcgctgacgattgagggggtacggatcgttatcgattcgggcctctcgcgcgtggcg
gaggaagacctgggcgggctgggcagccggctgacgactgtgagggcctcgcgggcttcg
gcagaccagcgccgggggcgggcagggcgcacatcgccgggcgtctgctatcgcctctgg
gatgaagccgccacgcgcggcctgatggcagcgccgacgccggaaattctggttacggat
ctttccggccttgctctcacgctggcggaatggggcgcgccggacgctggcgcgctgacc
tggatggacgcgccacctgccggaaagctgaaaggcgcgcgcgccgggctcatcgcgctg
ggcgcgctggacgcagacggggtgctgaccccgcgcggcaaggaaatggcgcgcctgccg
ctgccgccgcgccttgccgcgctggtggcgtcggcccccggcgcgcccgagaaagccctc
gccgccgagattgccgctatgatgggcgagcgcggcatgggcggggacagcagtgatctc
acccagcgtctccagcgtttccgcaccgatggcagcccgcgcgcccgcgcgctgaagcag
caggccaaaagctggggcgggggagagacgccgggcggcgatctggcaaagctgctcgcc
cgcgcctggcctgaccaggtggcgcggcggcggccgggcagcgcgggcagctatctcatg
gcttcggggcgcgcggcaggtgttcagccctctgacggtttggccaagtctgactggctg
gtcgtggctgatctgggcggggcggcgaaggagccccgcatcctgctgggcttgcctgtc
accgaggcagaggcgctcgccagccagaagaccataaccgaagaacgggccgcgtttgat
ccgaagacgggcaagttcaccgcccggcgcgtcaaggcgctgggcgcgattgtcctctcc
gaagcgccgctgcccaagccttcggcagaggcggcagccaccgcaatgctggcagcgatc
gagacggatggatttgcagccatcggcgcgggtgatgtgattgaggaaaccctcagccgt
ctgcgtattctcgccgaagccggcctgatcgaggcgccggatatttcgccagaaagcctc
gtgtcgggggcgccggtctggctgaagcccgccctgaagcggcgcggggcgcagctgccc
gaagatcacgatgtgcgtgaagcgctggtccagtcgctcgattggccgttgcaagaggcg
ctgcgcaatcatgcgccgctgagcctggagctgccctcgggtcagagcgccagggtggac
tggctggacccgcgtgcgccgctggtctcagcgcgggcgcaggcgttctatgggctgacc
gaacacccgaagattgccgcgggccgcgtgccggtcaccgttgagctgctgtcgccgggc
atgaaaccggcggccaccacgcaagacctcgcgcggttctggggggcaggctataaggac
atggccaaggacatgcgcgggcgctatccaaagcatgactggccggacgacccggcaaat
gcccgcgcgcatgaggggcgcaccaagaaacgcctctag
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