Hyphomonas neptunium: HNE_1118
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Entry
HNE_1118 CDS
T00397
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNE_1118 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hne03019
]
HNE_1118 (rhlE)
Enzymes [BR:
hne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNE_1118 (rhlE)
Messenger RNA biogenesis [BR:
hne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNE_1118 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABI78241
UniProt:
Q0C354
LinkDB
All DBs
Position
complement(1126727..1128121)
Genome browser
AA seq
464 aa
AA seq
DB search
MTKVIMSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLA
FAAPILDRLSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKI
GGQIRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAK
NVPSKRQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASL
LIEKIRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGR
VPILVATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERP
TLRAIEKLTGLKLAPNGVSLPDEPLRKPGKPQGNRSGNGGGRGGARSGGGYQGQSSGSQS
GGSHSGRPHRKGPPGGGANASGQNSQRSSNGAARPRRFKERADA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaaagtaatcatgtccgatttccaatccctcggccttacgggccgtattctcacg
tctttgaccaaagccggctacacagcccctacccccattcaggaacaggccatacctctg
gtcatccagggccgcgacattgtcggcctcgcccagaccggtacaggcaagacccttgcc
ttcgcagccccgatccttgaccgcctcagccgcaacgccagccctgcacctgtgcgcggc
acccgcgttctggtgcttgcaccaacgcgcgaactggccggccagatcgccacctccttc
ggcacctatggcgcgggcctcaacctccgtgtcgtgatggtgtgcggcggcgcaaagatt
ggcggccagatccgtcagctcgagcgcggcgcgcatatcctggtggcaacacccggccgc
ctgatcgacctgatggaacagcgcgctgtttcactcgacaaggtggaaaccctgatcctc
gacgaagccgaccagatgctggaccttggcttcattcacgcccttcgtgccatcgcgaag
aatgtgccgtccaagcgccagacgctgttcttctcggccaccatgccgaaagccgtcgaa
tcgctggcggcgaccttcctgcgtaatccggcagaagtctccgttgcgccgccagccact
acggcaggtcgcattgaacagcgcgtctgctttgtggagcagcccgaaaaggcttcactt
ctgatcgaaaaaatccgcgatccggaactgcgctcagcgatcgtctttacccgcaccaag
catggcgcagacggcgttgtgaaacgccttgccaaagcggacatcgactccgttgccatc
catggcaacaagagccagtcccagcgggagaaagccctcgaggccttcaaggcgggccgc
gtgccgatcctggtggcgaccgacattgccgcccgcggcattcacgttgacgccctcacg
cacgtcatcaactatgacctgccggatgtgcccgaacagttcgtacaccgcatcggccgc
accgcccgtgccggcaactcgggcgtggcgatctccttctgctcgcgcgatgagcgcccg
acgctccgcgccatcgaaaaactcacgggcctgaagctggcaccaaacggcgtcagcctg
ccggacgagcctctgcgcaagcccggcaagcctcagggcaaccgttcgggcaatggcggc
ggccgtggcggcgcgcgcagcggcggcggctatcaaggccagtcatccggttcacagtcg
ggcggctcgcactctggccgtccgcatcgcaaaggcccgcccggcggcggcgccaatgct
tctggccagaattcccagcgctcttccaatggcgcggcccgtccccgccgcttcaaggaa
cgtgcggacgcctga
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