Hyphomonas neptunium: HNE_1767
Help
Entry
HNE_1767 CDS
T00397
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03030
DNA replication
hne03430
Mismatch repair
hne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNE_1767 (dnaE)
03430 Mismatch repair
HNE_1767 (dnaE)
03440 Homologous recombination
HNE_1767 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hne03032
]
HNE_1767 (dnaE)
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_1767 (dnaE)
Enzymes [BR:
hne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HNE_1767 (dnaE)
DNA replication proteins [BR:
hne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HNE_1767 (dnaE)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HNE_1767 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
ABI78400
UniProt:
Q0C1C2
LinkDB
All DBs
Position
1808583..1812005
Genome browser
AA seq
1140 aa
AA seq
DB search
MTKPVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSDY
GVQPIMACCFDVTDGSPKAELFRLTAYAQDDVGYKRLMFLSSRAYLEADDGVPRLHKKYL
LENTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYVEITRHGTQEEIKS
ETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQDDRKRVEPDQYLKS
PEEMEVLFADLPEAIANTSEIAIRCSVRAETRKPILPNFSKEGRSEGEELALQARQGLEE
RLAEADRLYAERQVYLDRLEYELGIIDRMGFPGYFLIVSDFIKWAKANGIPVGPGRGSGA
GSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFCQERRGEVIRYVREKYGADS
VAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNPAKPPTLDEAIAAEPKFDDE
IAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVELVPLYNDPRADLPATQFNMK
YAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRSMDDPATYELMASGETLGVF
QLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYVQGKEDPASVRYQHPDLKPV
LEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKLEEMIAQRRRFVEGAAANKG
MKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKCHYPKEFLAASMSLDIGNTD
KLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGAIKGVGVEAMKHVSAVRSEG
GPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRARVFAVVPMLAQYCASHAEDR
SGGQGGLFGESEPALRPEFPPSRPWTAQQKLDEEFKSIGFYFSGHPLDDVLTSIDRDRVT
LAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLTISDPTGELEMMVFNEGLQQYG
DLLQPGKAVAITVTAKLNGEELRLNLDRAVELEAARLSKPSGSLMVRLGPDADPEDLAGV
IRRLEQVSDGDRGVIIVELILRDGRIVTMRLPQTYTIGLRAQRALKEVPGVEKVDPRQAA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaagcctgtttttatccatcttgccatccggtccagcttttcgctgctggaaagc
atgattacgcctgctgatctggcaaagtggtgcaagcaatactccatgcccgcgatggcg
gtgactgacagaaactgccttttcggggcgttagagctttccattaagctgtcagattac
ggcgttcagccaatcatggcgtgctgttttgatgtcaccgatggatcgcccaaagcagaa
ctgtttcggctcactgcatatgctcaggatgatgtcggctataagcgtctgatgtttttg
tcctctagggcgtatctggaagcagacgatggcgtgccgcgcttacacaaaaaatatctg
ctggagaacacagagggcctcattcttctgacgggcggcgcagaaggcgaagtcgcgcgt
cacatcctcaagggccgcttggccgacgcccggacagaactgtcaaccttggcgaccgcc
tatcctgggcgttgttatgtcgaaattacccggcacggaacgcaggaggaaatcaaatcg
gaaacgggcttggttgagttggcttacgagcttgggctccccctcgttgccactcacgat
gcccgtttcttgaagccagaagatgtaacagcgcacgatgccatgatgtgcatcgcaaac
gggcaatatcttggccaggacgaccgcaagcgcgtcgagccagaccaatatctgaaatct
cctgaagagatggaagtgctgtttgcggaccttcctgaagcgatcgcaaatacttcagag
atcgcgattcgctgttcggtaagggctgagacccgcaaaccaattttgcccaatttcagc
aaggagggacgctcggaaggtgaggagctcgccctccaagctcgtcaaggtctagaggag
cgtttggcagaggcagatcgtctgtatgctgagcgacaagtatatctcgatcggcttgaa
tatgaacttggtatcatcgaccgcatgggattccccggatacttccttatcgtctcggac
ttcatcaagtgggcaaaggcgaacggtattcctgtggggccgggcaggggatcgggcgct
ggttcactcgttgcctgggttctgctgattacagatctcgatccgttgaggtttgatttg
ctgtttgagcgcttcctcaaccccgagcgcgtttctatgccagacttcgacgtggatttc
tgccaggaacgccggggcgaagtgatccgttatgtccgcgaaaaatatggcgcagacagt
gttgctatgatcatcacctttggcacgcttcaagccaaggctgtggtgcgcgatgtcggc
cgcgtgatgcagatgccctacggccaggtcgaccgccttgcgaaacttatcccgttcaat
ccggccaagccaccaaccctggatgaagcgatagcggctgaaccaaagttcgatgatgag
atcgcggccgatgcgcgcgttggcgagctgatcgacacagcgcgtgcgctggagggaatg
taccgcaacgcagggacgcacgctgctggcgttgtgatcgcagaccgcccgcttgttgag
cttgtgccgctttataacgatccgagagccgatctacccgctactcagttcaatatgaag
tatgccgaaatggcgggtctcgtgaagttcgacttcttggggctgaagaccctaactgtg
atagaccgtgcgctgaactttattcgccgcgatggcggcgatgtgggccccgcatggcga
agcatggatgatccagccacttatgagcttatggcaagtggtgaaacgctgggcgtattc
cagcttgaaggggcgggcatgcgcgacacgcttcgccgggtgcggcccaacaatattgaa
gatctgatcgccatcatctccctctatcgccccggccctatggagaatatcccagtctat
gttcagggcaaggaggatccggcgtcggtccgttatcagcatccagacctgaagcctgtg
cttgaggcaacttatggtgttcctgtctatcaggagcaagttatgcggatggcgcaggaa
attgcgggctattctctgggtgaggccgacctcctgcgtcgcgcgatgggtaagaagaaa
cttgaagagatgatcgcgcagcgccggcgtttcgttgagggcgccgctgccaacaaggga
atgaaagattcgctggccaacgaaatcttcgacaccatggagaagttcgccggttacggg
ttcaacaagtcgcacgcagcagcttatgcgctcatcggctaccatacagcctttctgaag
tgccattatcccaaagagttcctggcggcatcaatgagcctggatattggaaacactgac
aagctcgcagcgttttttcaggaggccaagcgcttgcggcttcacgttctcgcgccggac
atcaattcatcgcagccggatttcgatgtgaatgaggacggcattgtctacgccctcggg
gcgatcaagggcgtgggcgtcgaggcaatgaaacacgtttcggccgtaagaagcgagggc
ggtccctttaaagacctctatgactttgctgagcgggttgatcccaagcacgtgaacaag
aaggctttggagtccctggcaaaatctggagcgcttgattgtctggaaggtaacagggcg
cgcgtatttgctgttgtgccgatgctggcccaatattgcgcgagtcacgctgaagatcga
agtggaggtcagggcgggctattcggagagtccgaacccgcgcttcgtccggaatttccg
ccctcaaggccatggactgcgcaacaaaagctggatgaagaattcaaatccataggattt
tacttttcgggtcacccattggacgatgttctgacgtcgatagaccgggaccgcgttacg
ttggcgatggaagtgcacgagcgggcgggagacgggaaacctctcgaaatgataggtatc
gtgcggacgcgcaatgacaagcccagcaagaggggcggcaagtttgctttcctgactatc
tccgaccccaccggtgaacttgaaatgatggtcttcaatgaaggcttgcagcaatatgga
gatttgctgcagcccggaaaagcggttgccatcaccgttacagccaaattgaacggggaa
gaacttcgcctcaatcttgaccgggcggtcgaattggaagctgcgcgtttgtcgaaaccg
tcagggtccctgatggtccgtctcgggcccgacgcagatcctgaggatctggccggcgtt
atacgtcggttagagcaagtttccgatggcgacagaggcgtgattatagttgaactgatc
ctccgtgacggacggattgtcactatgaggttgcctcaaacctacacgattggccttcgc
gcccagcgggctctgaaagaggttccgggtgtcgagaaggtagatccgcgccaggcagcc
tga
DBGET
integrated database retrieval system
