Hyphomonas neptunium: HNE_1883
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Entry
HNE_1883 CDS
T00397
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hne
Hyphomonas neptunium
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_1883 (addA)
Enzymes [BR:
hne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNE_1883 (addA)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HNE_1883 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ABI78161
UniProt:
Q0C109
LinkDB
All DBs
Position
complement(1946026..1949532)
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AA seq
1168 aa
AA seq
DB search
MSDQTAEGDAFAAAIRAQADAANPDVSAYATANAGSGKTKVLIDRVARLLLRREDGRPGA
DPDSILCITYTRAAANEMLTRLFRTLGDWAVKEDDKLREALSKLEGRAPEKYSREDLRDA
RRLFARALETPGGLRIETIHAFCARILRRFPLEAGVVPGFAEMEDRDAKALWQAAKDRAI
LEAAQSAPDELALIAREAMNEGAASALDALKGSGAAVLRFAERHDFVFERMMEALRADLG
APVESPAEILAAAMGDRLPRDVIREAMLALLKGTATDQGRAEVLEKVLNAETPEAIWAAY
APFFLTDKGEFRKQNPYTKTPGQLCPLLPEYFQIKDGEGRETARVRELVEVLQRAKAFAR
TAALIRIGLPALEAYRDEKARRGALDFDDLIQKTRALLEADGMASWVLYKLDGSISHVLL
DEAQDTSPDQWDLIRALTHEFGSGEGRDYSQDPRTMFIVGDEKQSIYSFQGAEPERLLTE
TRRLEERMAGAAGVEMLMSFRSVPEVLTYVDTVWNNSPPIDVGIGGMPPRTADNTLHTAR
RWNEHGAVEIWPIDPKIADDETDAWARPVDVVRATSPKAKLATSVARAVRRMIDRGETVW
DGKAQRATRPEDVLILVSKRQGGLFDSLINALKAEGLPVAGADRLILTDFIGVQDCLNLM
RFATLDLRDLTLAEILRGPFCGLVDDDQYLFSLASRRAKGETLWSRVKASDDPDVQQAAR
FLQGLFDRAHLPPYEFLSHVLDRVGEGGQTGWEQLNARLGMPARDPIEALLSRALSHDSA
GPSSLQSFVASMEAENVEIKRDLAEAGREVRVMTVHGAKGLQAPIVILPDTTFKPKASAP
SVLESANAVVWSPRKDTDAEASKRARAIAEAKAREEHRRLLYVALTRAQDRLIIAGHWQG
QAGEDKTGYEKDSWYALCDAAMDLLPFEETDQGRRYGKVTTVAEADTDSSLGVGGLPEWA
LRPAPIDPVARKLSAPTSLLGPKTRIVAPFDAAREERLKRGRAIHALLQYLPELPEDGRE
AAADAYLSRDADLTDGQRAEMKAAALGVMRDPALGAIFQPGGRAEAAIIGKSKDLPEGTV
INGRVDRLVVTPERVWVIDFKTDQPAPDRPEDVADTYVAQMAAYWAVLKTAFPEREVVAA
LCWTDGPRLMRLPEAQLLAVLTSARGMV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcagacggcggaaggagacgcctttgctgcggccattcgggcgcaggcggat
gcggccaatccggatgtgtcggcttacgccacggcgaatgctggcagcgggaagacaaag
gttctgatcgaccgggtggcgcggctgctgttgcggcgcgaggacgggcggccgggggca
gacccagactccattctctgcattacatatacgcgcgcggcggccaacgagatgttgacc
cggcttttccggacactgggcgattgggccgtgaaggaagatgacaagctgcgcgaagcc
ttgtcgaaactggaggggcgggcgccggagaaatattccagggaagacctgcgcgatgcg
cggcggctgtttgcgcgcgcgctggagacgccgggcgggctgaggatcgagacgatccat
gcgttctgcgcgcgtatcctgaggcggtttccattggaggccggggtggtgcccggcttt
gccgagatggaggaccgggacgcaaaggcgttgtggcaggcggcaaaggaccgggcgatc
cttgaggcagcgcagagcgcgccggacgagctggcactcattgcgcgcgaggcgatgaat
gaaggcgcggcaagcgcgctggacgcgttgaagggttccggcgcggcggtgctgcgattt
gccgagcggcatgattttgtatttgaacggatgatggaggcattgcgggcggaccttggt
gcgccggtggaaagcccggcggaaatactggcggcggcgatgggggaccggttgccacgg
gatgtgatccgggaggccatgctggcgctgctgaaaggaacagcaacggaccagggacgg
gcggaggttctggaaaaggttctcaatgcggaaacgccggaggccatttgggcggcgtat
gcgcctttcttcctgaccgacaagggagagttccggaagcagaacccctacaccaagacg
cctgggcagctttgtccgctgttgccggagtatttccagatcaaggatggcgaaggccgg
gagacggcgcgggttcgggaactggtggaggtattgcagcgggcgaaggcgtttgcgcgg
acggcggcgctgatacgtatcgggttgccggcgctggaggcgtaccgggatgagaaggcg
cgccggggggcgctggactttgatgacctgatccagaagacgcgagccttgctggaagcc
gatggcatggcgagttgggtgctctacaagctggatggcagcatttcgcacgtgttgctg
gacgaggcgcaggatacgagcccggaccagtgggaccttatccgcgcgctgacgcatgag
tttggatcaggcgaggggcgcgattattcgcaggacccgcggacgatgttcatcgtgggg
gacgagaagcagtcgatctactcgttccaaggggctgagccggaacgtttgctgacggaa
acgcgccggctggaagagcggatggcgggcgcggcgggtgtcgagatgctgatgtcgttc
cggtctgtgccggaagttctgacctatgtggatacggtgtggaacaattctccgccgatt
gatgtggggattggcggtatgccgccgcggacggcggacaatactctgcacacggcgcgc
cgctggaacgagcatggcgccgtcgagatatggccgattgatccgaagattgccgatgat
gagactgatgcctgggcacgcccggtggatgtggtgcgggcaacatcgccgaaggcgaag
ctggcaacgtctgtggcgcgcgcggtgcggcggatgatcgaccggggcgagacggtgtgg
gacggcaaggcgcagcgggctacgcggccggaggatgttctcattctcgtcagcaagcgg
cagggcggattgtttgattctctgatcaatgcgctgaaggccgaagggctgccggtggca
ggggccgaccggctgatcctgacggatttcatcggcgtgcaggactgcctcaaccttatg
cggtttgcgacgctggatctgcgggacctgactctggcagagattttgcgcgggccgttc
tgcgggctggtggatgatgaccagtatctgttctcgctggcctcgcgccgggcgaaggga
gagacgctttggtctcgcgtcaaggcgagtgatgacccggatgttcagcaggcggcacgt
ttccttcaaggcttgttcgaccgggcgcatctgccgccgtatgaattcctgagccatgtg
ctcgaccgtgtcggagagggcgggcagacaggatgggaacagctgaatgcgcgcctgggc
atgcctgcacgcgacccgattgaagcgctgttgtcacgcgcgctgagccatgacagcgcg
gggccgtcttcgttgcagtcgtttgtcgcgtcgatggaagcggaaaatgtcgagatcaaa
cgcgacctggcggaggctggccgggaggttcgcgtgatgaccgttcacggcgccaagggg
ttgcaggcgccgattgtgatcctgccggatacgacgttcaaaccaaaggcgagcgcgccg
tcggtattggagagcgcgaacgccgtggtctggtcgccgcgcaaggatacggacgcggaa
gcgtccaaacgggcgcgggcgattgcggaggccaaggcgcgcgaggagcaccggcggctt
ctgtatgtggcgctgacgcgggcgcaggaccgcttgatcatcgccgggcattggcagggg
caggcaggcgaagacaagaccgggtatgagaaggactcctggtacgccctttgcgacgcc
gccatggatttgctgccttttgaggagaccgatcaggggcggcggtatggaaaggtcacg
accgtcgcagaggctgataccgattcctctttgggcgtcgggggattgccggaatgggcg
ctgagaccggcgccgattgatccggtggcccggaagctctcggcaccgacaagcctgctt
ggccccaagacccggattgttgcgccattcgatgctgcccgcgaggaacgcctgaagcgc
gggcgcgccatccacgccttgctgcaatatctgccggaactgccggaagacgggcgcgag
gcagcggcggatgcctatctctcacgcgatgcggacctgacggatggtcagcgggcagag
atgaaggcggcggccttgggcgtaatgcgcgatccggcgctgggcgcaatctttcagccg
ggtgggcgcgcagaagcggccatcatcggtaaatccaaagacttgcctgaaggcacggtg
atcaatgggcgcgtggaccggctggtggtgacaccggagcgggtgtgggtgatcgacttc
aagacagaccaacctgcgcccgaccggccagaggatgtagccgatacctatgtggcgcag
atggccgcgtactgggctgtgctgaagacggcctttcccgagcgggaagtggtcgctgcg
ctgtgctggacagatgggccgcgcctgatgcgcctgccggaagcgcagcttttagctgtg
ctcacaagtgcgcgcgggatggtttga
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