Hyphomonas neptunium: HNE_1968
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Entry
HNE_1968 CDS
T00397
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hne
Hyphomonas neptunium
Pathway
hne03410
Base excision repair
hne03430
Mismatch repair
hne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HNE_1968 (recJ)
03430 Mismatch repair
HNE_1968 (recJ)
03440 Homologous recombination
HNE_1968 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_1968 (recJ)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HNE_1968 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HNE_1968 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNE_1968 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
tRNA_anti-codon
SSB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ABI76220
UniProt:
Q0C0S5
LinkDB
All DBs
Position
complement(2036206..2037999)
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AA seq
597 aa
AA seq
DB search
MSQPATVQAAPFLGVERSAGGRRWRLADVDETMVRRLMPAAAGSDLVARLLAGRGVTPET
APSYLAPTLRDLFPDPSLFADMDKAAGIILDAIVAGKRVCVFADYDVDGGTSSAILARYF
RAWGRELGLYVPDRLEEGYGPSPEAFRWLKAQGYDLVITVDCGAAAVRALDEAVSIDLPV
VVLDHHLMSGHLPETAALVNPNRPDCTSGQGHLAAAGVVFVFAAAMNRLARQRNIAPPAG
LPDILPYLDLCALGTLCDMSPLTGVNRAFVRQGLTIMSRGENVGLRALADVSGIGEIDSV
YHATFLLGPRLNAGGRVGDPWLAAKLLATDDRGEAIALAERLHTLNDERRAVEAAIQDEA
TAQAERALAANPDRGIIIAAGEGWHPGVIGIVAGRLKDRFHLPTIIIGWGEGLGPVAKGS
GRSVTGVNLGDAISAAAREGIILSGGGHAMAGGLSLEPHQIAAFDDWMVAHMAQFTAERD
AALDLHIDAVLSPGSATTDLYDLIAALGPFGMGAPEPVFAMTDVMPTGVRRIGANHLRFT
AENNTGRIECIAWRVADEPMGDLLRTGQRVGLAGRLKSDQWNGRRRVQLEILDAAML
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcccgccacagttcaagccgcgccatttctgggtgtggaacgctccgccggt
gggcgccgctggcggctggccgatgtggacgaaacgatggtacggcgcctgatgccggcg
gctgcggggtcggatcttgttgcgcggctgcttgccgggcggggtgttacaccagagacg
gcgcccagctatctggcacctaccctgcgagacctttttcccgatccgagcctctttgcg
gacatggacaaggcggcaggcatcattctcgacgccattgttgccggaaaacgtgtctgc
gtgtttgcagattacgatgtcgacggcggcacatcttcagccatactcgcgcgctacttc
cgcgcctggggcagggagctggggctttatgtgccagaccgccttgaggaaggttatggc
ccgtcgcccgaggcattcaggtggctcaaggcccagggctatgaccttgtgattaccgtc
gattgcggcgcagcagcggtcagggccctcgacgaagcggtgtcgatagatctgccggtt
gtcgtgctggaccatcacctgatgtcgggccacctgccggaaacggcggcgctagtgaat
cccaaccgtccggactgcacatcggggcagggccaccttgcggcggcgggcgtggtgttc
gtctttgcggcggccatgaaccgcctggcgcggcagcggaatatcgccccgccggcgggc
ttgccggatattctgccctatctggatctctgcgctctcggcacgctgtgcgacatgtct
ccgctgaccggcgtcaaccgggcatttgtgcgccagggcctcacgatcatgtctcgcggc
gagaatgtcgggctaagggcgctggcagatgtgagcgggatcggtgagatcgacagcgtc
tatcatgcgacgttcctgctggggccgcgattgaatgccgggggacgggtgggtgatcca
tggctggcggcgaagctgctggcaacggatgaccggggcgaggcgattgcgctcgcagag
cgtttgcataccctcaacgacgagcgccgcgctgtggaagcagccattcaggacgaggca
acggcgcaggctgagcgggcgctggcagccaatccggatcgcggcattatcattgcggca
ggtgaagggtggcaccccggtgtgatcggtattgtggccggccgcctgaaggaccggttc
catttacctacaatcatcatcggatggggcgaaggccttggaccggtggccaaaggctct
ggccgctctgtgacgggtgtaaatctgggcgatgcaatctctgctgcggcaagagaaggg
atcatcctttccggaggtggccatgccatggcgggcggtctcagccttgagccgcatcag
atcgcagcgtttgacgactggatggtcgcgcatatggcgcaattcacagccgagcgggac
gcggcgctggacctgcatatcgacgccgttctttcacccggcagtgccacgaccgatctc
tacgatctgattgcggcgcttggcccatttggcatgggcgcgccagagcccgtctttgca
atgacggatgtaatgccgacgggcgtccgccgcatcggtgccaaccacctgcgcttcacg
gcggagaataatacgggacggatcgagtgcattgcctggcgtgtggcggacgagcctatg
ggcgatcttctgcgcacggggcagcgtgtcggcctcgccggacgcctcaagtctgaccag
tggaatggccggcgccgggtgcaacttgaaatcctggatgcagcaatgctgtga
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