Hyphomonas neptunium: HNE_1985
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Entry
HNE_1985 CDS
T00397
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNE_1985 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_1985 (mfd)
Enzymes [BR:
hne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNE_1985 (mfd)
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNE_1985 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_30
RecG_dom3_C
Cas3-like_C_2
UB2H
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABI78569
UniProt:
Q0C0Q8
LinkDB
All DBs
Position
complement(2058461..2061898)
Genome browser
AA seq
1145 aa
AA seq
DB search
MARDDRIAQAARRMALFAAPRLEQVDLPGWDVLPYDRISPTPAVAARRCAGLARISRYEK
SQGPLLVITTAGALVQRSAPVETLKKASLSIRAGETVKANDLTEYLAFNGYVRSGTVREQ
GEYAVRGGIIDIFPPTAAEPFRLDFFGDVLETIRTFDTETQRSTGKAEAVTFAPVSEILF
NDNVLAAFRDRFLETFGPPSGDQMYEAARASIRRQGVESWLPLFHKQVDTLFDYVGPGAL
FGLSHLTSEAAHERLTQAADYYAARLEAGGGDIRKARVLPPGRLYLDLEELDDLLATNAV
VRFSPGEPSPNAFDMGGRRGRDFAPERQRTDENIFETVIAHARALYASGKPVVFAAWSAG
SADRLINVLSDHGLTALAQVHSLDAAKKTDFTVAEVPLEEGFNLPDVAMISEADVLGDRL
AAPRRKRKSASFITDATSLTPGDLVVHIDHGVGKYIGLKTLEVTGAPHDCLQLEYAGGDM
IFIPVENIDLISRYGSEESESQLDRLGGAGWQTRKAKAKKRILEMAAELMQIAAARELKR
AEAVQSGQGLYEEFAARFPYEETDDQLSAIEDVLGDLSSGKPMDRLVCGDVGFGKTEVAL
RAAFVAAMSGKQVAVIAPTTLLARQHFKTFEERFAGWPLKVRALSRFVGAREAAETRDGL
ASGSVDVVVGTHAVLSKDMNFKRLGLMIVDEEQRFGVKHKERLKELKSDVHVLTLSATPI
PRTLQMALTGIRDLSIIATPPVDRLSVRTYITEEDTVTLREALLREKYRGGQAFFVAPRI
TDLDKLENFLRTHVPEVSFIVAHGQMAAGELEDIMTAFYEGKYDVLLSTTIVESGLDIPR
ANTLIIHRADMFGLAQLYQLRGRVGRSKLRAYAYFTTPKDKVVTESAEKRLKVLQSLDSL
GAGFQLASHDLDMRGAGNLLGDQQSGQVKEVGVELYQSMLEDAVKALQAGARDDADVADD
WSPQINLGVAVLIPEDYVDDLNVRLSLYRRLSDIITAQDREAFAAELIDRFGPLPEPTRQ
LLDVTAIKVSCKALGIAKLDAGEKGALFTFRSDTVMDPQKLMQIVRTRPNQMKLRPDSKL
VHSGLGGTPERRLSGAKAFLRELEAACGIVSPASTDAVASMPSRKAAAPEDKWAKPIKSG
LLSED
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgggatgaccggatcgcgcaggcggcaagacggatggcgctgtttgcggcgccg
cggctggagcaggtggatctgcccggctgggacgtactgccctatgaccggatcagcccg
acccctgcggtggccgcgcggcgctgcgcgggcctcgcccgcatctcgcgctatgagaaa
tcgcaaggcccgctgctggtgatcacgaccgcgggcgccctcgtgcagcgctcggcgccg
gtcgagacgctgaagaaagcctcgctctcgatccgcgccggagagacggtgaaggcgaac
gacctcaccgaatatctcgccttcaacggctatgtccgctccggcaccgtgcgcgagcag
ggcgagtatgcggtgcgcgggggcatcatcgacattttcccgccgacggcggctgagcct
ttccggctcgacttcttcggcgacgtgctggagacgatccgcaccttcgataccgaaact
cagcgctccaccggcaaggccgaggccgtcaccttcgcgcccgtcagcgagatccttttc
aatgacaatgtgctggccgccttccgcgaccggtttctggaaaccttcgggccgccctcg
ggcgaccagatgtatgaagctgcgcgcgcctcgatccgccggcagggcgtggaatcctgg
ctgccgctgtttcataaacaggtcgacacgctgtttgactatgtgggacccggcgcgctt
ttcgggctgagccacctgaccagcgaagcggcgcatgaacgccttacgcaggcggccgac
tattacgctgcgcgccttgaggcaggcggcggcgacatccgcaaggcgcgcgtgctgccg
ccgggccggctctatctggacctggaggaactcgacgatctgctggcgacgaacgcagtc
gtgcgcttctcgccgggtgagccttcgcccaacgcctttgacatgggcgggcgccggggg
cgggactttgcgcctgaacgtcagcggacggacgagaacatcttcgaaaccgtgatcgcc
cacgcccgcgcgctctatgccagcggcaagccggtggtgttcgccgcctggtcggcgggg
tcggctgaccgtctgatcaacgtgctgagcgatcacggcctgaccgcgctggcgcaggtg
cattccctcgacgcagcgaagaagactgacttcacggtcgccgaagtgccgttggaagaa
ggcttcaaccttccggatgtggcgatgatttcggaagcggacgtgctgggcgaccgcctg
gccgcgccgcgccgcaagcgcaaatccgcgagcttcatcaccgacgccacctcgctcacg
cccggcgatctcgtcgtgcatattgaccatggcgtgggcaaatatatcggcctcaagacg
ctggaagtgaccggcgcgccccatgactgcctgcagcttgaatatgccggcggtgacatg
attttcatccctgtagagaatatcgacctcatcagtcgctatggctcggaggagtccgag
agccaactcgatcgcctcggcggggctggctggcagacgcgcaaggcgaaagccaagaag
cgcatccttgagatggcagccgagctcatgcagatcgccgcagcccgcgaactcaagcgc
gccgaagcggtgcagagcgggcagggcctctatgaagagtttgccgcgcgcttcccctat
gaggaaaccgacgaccagctctcggccattgaagatgtgcttggcgatctctcgtccgga
aagccgatggaccgtctcgtctgcggcgatgtgggctttggcaaaaccgaagtggccctg
cgcgcggccttcgtagccgccatgagcggcaagcaggtggcggtgattgcgccgacaacg
ctgctcgcccggcagcatttcaagaccttcgaggaacgcttcgccggctggccgctgaag
gtccgtgccctgtcacgttttgtcggcgcccgcgaggcggcggagacgcgcgatggcctc
gccagcggcagcgtggatgtcgttgtcggcacccatgccgtgctcagcaaggacatgaat
ttcaaacggctcggcctgatgatcgtggacgaagaacagcgttttggcgtgaagcacaag
gagcgcctgaaagagctgaaatcggacgtgcacgtcctgacgctgtctgccacgcctatt
ccgcgtacgctgcaaatggcactcaccggtattcgcgatctctcgatcattgcgacgccg
ccggtggaccgcctctcggtgcgcacctacatcaccgaggaggacaccgtcacgctgcgc
gaagccctgctgcgcgagaagtatcgcggcggtcaggctttcttcgtcgcgccgcgcatc
actgatctcgacaagctggaaaacttcctgcgcacgcatgtgcccgaagtctccttcatc
gtggcccatggccagatggcggcaggagaattggaagacatcatgacggccttctatgag
ggcaaatatgatgtgctgctgtctacaacgattgttgaaagcgggctggatattccacgt
gccaacacgttgattatccaccgcgccgacatgtttggtctcgcccagctctaccagctg
cgcgggcgcgtgggccgctcgaaacttcgtgcgtatgcctactttacgaccccgaaagac
aaggtggtgaccgagagcgccgaaaagcgcctcaaagtgctccagtcgctcgactcgctc
ggtgccggtttccagcttgcgagccacgatctcgacatgcgcggcgcaggtaacctgctg
ggcgatcagcaatcgggccaggtcaaagaggttggcgtggagctctaccagtcgatgctg
gaagatgccgtgaaggcgcttcaggccggcgcgcgcgatgacgcggatgtggccgacgat
tggtcgccgcagatcaatctcggcgtcgccgttctgatcccggaagattatgtggatgat
ctcaacgtgcggctgtcgctctatcgccgcctatcggacatcatcaccgcgcaggatcgc
gaagcctttgcggcagagctgatcgaccggtttggccctctgccggagccgacgcgccag
ttgctggatgtgacggcgatcaaggtttcgtgcaaggcgctgggcattgccaagttggac
gcgggcgagaagggcgcgctgttcaccttccgcagtgataccgtgatggacccgcagaag
ctcatgcagattgtccgcacacggccaaaccagatgaagctgcgcccggattcgaaactg
gtgcattccgggctgggcggcacgccggagcggcggctatctggcgccaaggcgttcctg
cgcgagctggaagcggcctgcggcattgtctcgcccgcctccacggacgcggtggccagc
atgccctcgcgcaaggcggcggcgccggaagacaaatgggcaaagccgattaaaagcggc
ctgctgagcgaggattga
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