Hyphomonas neptunium: HNE_2888
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Entry
HNE_2888 CDS
T00397
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hne
Hyphomonas neptunium
Pathway
hne02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HNE_2888 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hne03021
]
HNE_2888 (rpoD)
Transcription machinery [BR:
hne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HNE_2888 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
STX6_10_61_N
eIF3_subunit
MJ0043_C
AF_0408_N
Motif
Other DBs
NCBI-ProteinID:
ABI75961
UniProt:
Q0BY77
LinkDB
All DBs
Position
complement(3045686..3047686)
Genome browser
AA seq
666 aa
AA seq
DB search
MATATKKKKNTAGDGEGEDDKETESGLVDFNATDVKKVLKRAQKRGFITHDEINQLLPDS
DMSSDQIEDVMSQISEMGIAVVETEEEAEEQGKALTKIEDKKVVAKKGNARGSDRTDDPV
RMYLREMGAVELLSREGEIAIAKRIEAGRDAMIRGLCESPLTFEAMMVWRDELMNERILL
RDLIDLEATYGAENPPPEPKPVEERPPEPAAPVKGKKRSAEEVDEVEAERMRQQQQEEEE
EDDAVAMSMSAMEGELREGVLAKLDEIADAFSRFRKLQDRLLVRRIEGKDLTPKAQGEYD
DLSLQIVDNLKTIHINNARIEALVEQLYAINKKLMGLEGKLMRLADAHGVPRKEFLHNYI
GSELEPDWAERVREISAKWKRLVDGKGEEVQVVRDEISEIAQEIGIPIDDFRRIVQTVQK
GEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKIIRTQRQMLHEIGREPTPEELAEKL
GLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL
RSFLDT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccaccaagaagaaaaagaacacggccggtgacggcgagggcgaagacgac
aaagagacggaaagcggtcttgtcgattttaacgccacagacgtcaaaaaggttctgaag
cgcgcccagaagcgcggcttcatcacccatgatgagataaaccagcttctgccggactcc
gacatgagttccgaccagatcgaggacgtgatgtcccagatctcggagatgggcatcgct
gtggtcgagaccgaggaagaggccgaagaacagggcaaggccctcaccaagatcgaggac
aagaaagtcgtcgccaagaagggcaatgcccgtggcagcgaccggaccgacgatccggtg
cggatgtatctgcgcgagatgggcgcggtggagcttctttcccgtgagggcgagattgcg
attgccaagcgcatcgaggccggccgggacgcgatgatccgcggcctgtgcgaaagcccg
ctgaccttcgaggccatgatggtgtggcgcgatgagctcatgaatgagcgcatcctgctg
cgcgacctgatcgacctggaagccacctatggcgcggaaaatccgccgcccgagcccaag
cctgtcgaagaacgcccgcctgagccggctgcgccggtcaagggcaagaagcggtctgcc
gaagaggtcgacgaggttgaggctgagcgcatgcgccagcagcagcaggaagaggaagag
gaagacgacgcggttgcgatgtcgatgtcggcgatggaaggggagctgcgcgaaggcgtg
ctcgccaagctcgacgagattgccgacgcgttcagccgtttccgcaagcttcaggatcgc
ctgctggtccgccggattgagggcaaggaccttacccccaaggcacagggcgaatatgac
gacctgtctctgcagatcgtggacaatctcaagacgatccacatcaacaacgcccgtatc
gaggcgctggtggagcagctctacgccatcaacaagaagctgatgggccttgaaggcaag
ctgatgcgtctggctgacgctcatggcgtgccgcgcaaggagttcctgcacaactatatc
ggcagcgagcttgagcctgactgggccgagcgcgtgcgcgagatttcggcgaaatggaaa
cgcctggtcgacggcaagggcgaggaagtccaggtcgttcgcgacgagatttccgagatt
gcccaggaaatcggcattccaatcgatgacttccgccggatcgttcagaccgtgcagaag
ggcgagcgggaagcgcgcatcgcgaagaaggagatggtggaagccaacctccgcctcgtg
atctcgattgccaagaaatataccaaccgcggcctgcaattcctggatctcatccaggag
ggcaatatcggcctcatgaaagcggtcgataagttcgaatatcgccgcggctacaaattc
tcgacctatgccacctggtggatccgtcaggccattacccgctctattgcggaccaggcc
cggacgatccgtatcccggtgcacatgatcgagacgatcaacaagatcatccgtacacag
cgccagatgctgcacgagatcggccgcgagccgaccccggaagaactggccgaaaagctc
ggcctgccgctggagaagatccgcaaggttctgaaaatcgcgaaagagccgatctcgctg
gaaacgccgattggcgacgacgaggattcaaacctcggcgacttcatcgaggacaagatg
gcgctgcttcccgtggacgcggccatccagtcgaacctgcgcgagacgacgacccgcgtg
ctggcttcgctcaccccacgtgaggaacgcgttctgcggatgcgctttggcatcggcatg
aacacggaccacacgctggaagaagtcggccagcagttctcggtcacccgcgaacgcatc
cgccagatcgaggcgaaggcgctgaggaaactcaagcacccgagccggagccggaagctg
cgaagctttctggatacctga
DBGET
integrated database retrieval system
