Hyphomonas neptunium: HNE_2938
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Entry
HNE_2938 CDS
T00397
Name
(GenBank) putative DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hne
Hyphomonas neptunium
Pathway
hne03420
Nucleotide excision repair
hne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNE_2938
03430 Mismatch repair
HNE_2938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hne03400
]
HNE_2938
Enzymes [BR:
hne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNE_2938
DNA repair and recombination proteins [BR:
hne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNE_2938
MMR (mismatch excision repair)
Other MMR factors
HNE_2938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABI77121
UniProt:
Q0BY27
LinkDB
All DBs
Position
complement(3097054..3099399)
Genome browser
AA seq
781 aa
AA seq
DB search
MFLMSSNPNRLSISQMASARPPVPTGDGAAYLNGLNPEQRDAVLHTEGPLLVLAGAGTGK
TRVLTSRLAHIVATRLAYPSQTLTVTFTNKAAREMRERAQALLGDAGEGLRWLGTFHSIS
AQILRKHAELVGLKSSFTILDTDDQIRLCKQIVQAENLDPKRWTPRYLAGLIDGWKNRAL
TPSKVPPEEAELFGNGKAIKCYEIYQARLRVLNACDFGDLLIHNITIFQESPDILREYHD
RFRYILVDEYQDTNVAQYLWLRLLAQGSKNLCCVGDDDQSIYGWRGAEVDNILRFEKDFP
GAKVVRLERNYRSTRHILAAASSVIAHNKGRLGKTLYVGNDSAVNEDTDAPKVKVRGLWD
GEAESRLIADDIESWVRGGGRHDGCAVLVRASWQMRAFEERFILLGIPYRVIGGPRFFER
AEIRDAMAYLRLIRSPDDDLAFERVVNEPKRGVGDTSLAKLQSYARQDGRSLFTLTPMVL
QTDEIKGGAKRGLTTFIDQINLWRGKLAGGMPHTELAEMILEESGYTDMLQKDRSPQAQT
RLDNLKELVRAMGEFDTLAGFLEHVELVMDASAGGNGEDQVQILTLHAAKGLEWPVVFLP
GWEEEVFPSRRSLDESGLKGLEEERRLAYVGITRARERCYISFVANRQIYGRWQAVMPSR
FIDELPPEHVDAVSETGYSGLPASADAFSGTIEDLGERSDYQSPGWKRLKENAGRPTGAP
PRDAAGLTATASGTSGFTTGARVFHDKFGYGRVAFSEGNKLTVDFDKTGRKKVIATFVTK
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgatgagttctaacccgaatcgtctctccatcagccagatggcatctgcccgc
ccgcccgtgcccacgggcgatggcgcggcctatctcaatggcctgaacccggagcagcgc
gacgccgtgctgcacaccgaaggcccgctgctggtgctggccggtgccggtacgggcaag
acgcgcgtgcttacctcgcggctcgcccatatcgttgccacgcgccttgcctatccctcg
cagacgctgacggtgaccttcaccaacaaggccgcccgcgaaatgcgcgagcgggcccag
gcattgctgggggacgcgggcgaggggctgagatggctcggcacgttccactccatctcg
gcgcagatcctgcgtaagcatgccgagctcgtcggcctgaaatccagcttcaccatcctc
gataccgacgaccagatccgcctctgcaagcagatcgtccaggccgaaaaccttgatccc
aagcgctggaccccgcgttatctcgccggtctcatcgatggctggaagaaccgcgcgctg
acgccctcaaaggtgccgcccgaagaggccgaactgttcggcaatggaaaggcgatcaaa
tgctacgagatctatcaggcgcggttgagggtgctcaacgcctgcgactttggcgatctg
ctgatccacaacatcacgatctttcaggaaagccctgatattcttcgcgaatatcatgac
cgcttccgctacattctggtcgatgagtatcaggataccaacgtcgctcagtatctctgg
ctgcgcctcctcgcgcagggctcgaagaacctctgctgcgtgggcgatgacgaccagtcg
atctatggctggcgcggcgccgaggtcgacaacatcctgcgcttcgagaaggactttccc
ggcgccaaggtcgttcgcctggagcgtaactaccgctccacccgccacatcctggcggcc
gcttccagcgtcatcgcgcacaataagggccgtctcggcaagacgctgtatgtcggcaat
gacagcgccgtaaacgaggataccgacgcaccgaaggtaaaggtgcgcggcctctgggac
ggggaggcggaaagccgcctgatcgccgacgacatcgaaagctgggtgcgcggcggcggg
cgccatgatggctgcgccgtgctcgtgcgcgcctcctggcagatgcgggcgtttgaagaa
cgcttcatccttctgggcattccctaccgcgtcatcggcggcccgcgcttcttcgagcgc
gccgaaatccgcgatgcaatggcctatctgcgcctcatccgctcgcctgatgatgacctg
gcatttgagcgcgtggtgaacgagcccaagcgcggggtgggggataccagcctcgccaaa
ctgcaatcctatgcccgccaggacgggcgcagcctgttcacgctcacccctatggtgctg
caaaccgatgagatcaaaggcggcgccaagcgcggcctgacgacgttcatcgaccagatc
aacctctggcgcggcaagctcgccggtgggatgccgcacacagaactcgccgagatgatc
ctcgaagagtccggctataccgacatgctgcagaaggaccgcagccctcaggcgcagacc
cggctcgacaacctcaaggaactcgtccgcgccatgggcgagttcgacacgctggccggc
ttcctggaacatgtggagctggtgatggacgcctcggcgggcggaaacggcgaggatcag
gtgcagattctcaccctccacgccgccaagggccttgaatggccagtggttttcctgccc
ggctgggaagaggaagtgttcccctcccgccgcagcctcgatgaaagcggcctcaagggc
ctcgaggaagagcgccgcctcgcctatgtcggcatcacgcgcgcgcgggagcggtgttac
atctccttcgtcgccaaccggcaaatttacggccgctggcaggcggtgatgcccagccgc
ttcattgacgagctgccgcccgaacatgtcgatgctgtctcggagacaggctattccggc
ctgcccgccagcgccgacgccttttccggtacgatcgaggatctgggcgagcgctctgat
tatcagagccccggctggaagcgcctcaaggaaaatgcaggccggcccacaggcgccccg
ccacgtgatgctgccgggctgaccgccaccgcctcgggcacttccggctttaccaccggc
gcccgcgtcttccatgacaagtttggctatggccgcgtcgccttctccgagggcaacaag
ctgaccgtcgatttcgacaagaccggccgcaagaaagtcatcgccaccttcgtgacgaaa
gcctga
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integrated database retrieval system
