Hyphomonas neptunium: HNE_3565
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Entry
HNE_3565 CDS
T00397
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hne
Hyphomonas neptunium
Pathway
hne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNE_3565 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hne03021
]
HNE_3565 (rho)
03019 Messenger RNA biogenesis [BR:
hne03019
]
HNE_3565 (rho)
Transcription machinery [BR:
hne03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HNE_3565 (rho)
Messenger RNA biogenesis [BR:
hne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HNE_3565 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_22
S1CSD-TOTE-2
NACHT
OB_RNB
ATPase_2
AAA_25
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ABI76901
UniProt:
Q0BWA7
LinkDB
All DBs
Position
complement(3700924..3702180)
Genome browser
AA seq
418 aa
AA seq
DB search
MTLRELKAKSPEELLAYAEELEVENASSMRTQDMLFAILKELADSEVEITGQGVLEVLTD
GFGFLRSPESNYLPGPDDIYVSPEVLKKANIRTGDTVEGPIVAPQDSERYFALTDVSQIN
FEEPEKANKKVHFDNLTPLYPEQRLKMESRDPTKKDRSGRVIDIVSPIGKGQRALIVAPP
RTGKTVLMQNIAAAIEENHPECYLIVLLIDERPEEVTDMRRTVKGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQRPKRF
FGAARNVENGGSLTIVATALIDTGSRMDEVIFEEFKGTGNSEVVLDRKIADKRTFPAIDI
MKSGTRKEELITPHDQLSKIYILRRILGPMGANDAVDFLLDKLKQTKTNDEFFEAMKN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
gtgactctgcgcgaactcaaggcgaaatcgcctgaagaacttctcgcctatgcagaggag
cttgaggtcgagaacgcctcctccatgcggacgcaggatatgctgttcgcgatcctcaag
gagctggctgacagcgaagtcgagatcacgggccagggcgttctggaagttctgaccgac
gggttcggcttcctccgctccccggaatccaactacctgccagggccggacgacatctat
gtcagcccggaagttctgaagaaggcgaacatccgcaccggcgataccgtcgaaggcccg
attgtcgcgccgcaggacagcgagcggtattttgcgctgaccgatgtcagccagatcaat
ttcgaggaaccggaaaaggccaacaagaaggttcacttcgacaacctcacccctctttat
ccggaacagcgcctcaagatggagagccgcgacccgaccaagaaggaccgttccggccgg
gtgatcgacattgtctcgccgatcggcaaaggccagcgcgcattgatcgttgccccgccg
cgcaccggtaaaacggttctcatgcagaacattgctgcggcgatcgaagagaaccacccc
gaatgttatctcatcgttcttctgatcgatgagcgtcccgaagaagttaccgacatgcgc
cgcacggtgaagggcgaagttgttgcctcgacctttgacgagcctgccacccgccacgtt
caggttgcagaaatggtcatcgagaaggcgaagcgccttgttgagcacaagcgtgacgtt
gtcatcctgctcgactcgatcacccgtctgggccgcgcctacaacacgaccgttccctcc
tccggcaaggttctgaccggcggtgtggatgccaatgcgctccagcgccctaaacgcttt
ttcggcgccgcgcggaatgtcgagaatggtggctcgctcaccatcgttgccaccgcgctg
atcgataccggcagccgcatggacgaagtcatcttcgaggaattcaaaggcacgggtaac
tccgaagtcgtcctcgaccggaagattgccgacaagcggaccttcccggccatcgacatc
atgaagtcgggcacccggaaagaagaactcatcaccccgcacgaccagctctcgaagatc
tatatccttcgccgtattcttggcccgatgggcgccaacgatgccgtcgacttcctgctc
gacaagctgaagcagacgaagacgaacgacgaattcttcgaagcgatgaagaactag
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