Hyphomicrobium nitrativorans: W911_05855
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Entry
W911_05855 CDS
T02943
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hni
Hyphomicrobium nitrativorans
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hni03019
]
W911_05855
Enzymes [BR:
hni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
W911_05855
Messenger RNA biogenesis [BR:
hni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
W911_05855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHB48030
UniProt:
V5SD92
LinkDB
All DBs
Position
complement(1233122..1235638)
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AA seq
838 aa
AA seq
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MTDTTPPFSLRRFAQALPIDEALPALTSALAAGPSAVLVAPPGAGKTTRVPLALDGAPWL
GGGKILVLEPRRLAARNAAARMAATLGEEIGESVGLRARLETRVSKKTRIEVLTEGVFTR
LILDDPALDGIGAILFDEFHERSLEADLGLALARDTQTSLRPDLRLVVMSATLAGKPVAE
LLGGAPLVTSEGRSFPVETRYLGKDPTRRLEDRMADAIARALRAETGSILAFLPGQGEIR
RTAESLRERLDPADAIVAPLYGALDRRDQDQAIAPAPPGARKVVLATAIAETSLTIEGIR
VVIDCGVARVPRYDPDVGITRLATVRVSRASADQRRGRAGRLGLGVCYRLWDEAETASMP
AFAEPEIRSADLAPLLLDCADWGVTDPWTLSWLDPPATAAIDAAREELTNLGALDADGRL
TETGRSLRALPLPPRLAVMVIQAARVGAERHAADIAAVLVERGLGGTGANLDQRIEAFRR
DRTPRATDMRRLAEGWAKTARAASPTINDANDGEAPSTAALLALAFPERIAKARGPHGQF
LLANGRGATMDAAEPLARAPFLVIAEMQGTAAATRILLAAESSDAEIARLARNRIAEREE
IVFDPAAAAIRTRRVRRLDAITLSSDPRPPEPGPESEAALAQGLAALGAQRLPWTKHQHQ
LRDRVAFLRNAAEDETWPDLSDAALTAALPEWLGPYLSGKTRLADIAADDLAQALDGLIP
WPLKQRLDAEAPTHFEAPTGQRHPIDYNGPGAPALHIRVQELYSLTRHPTVAGGRLPLTL
HLLSPAHRPIQVTRDLPGFWKGSWQSVKAEMKGRYPRHPWPDDPAATAPTTRAKPRGT
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaccacacctccgttctctctacggcgattcgcgcaagccttgcccatcgac
gaggcgctgcccgcgctgacatccgcgctcgcggccggaccctccgcggtcctcgtcgcc
cccccaggcgccggcaagacgacgcgcgtccctctcgcgctcgatggcgcgccctggctc
ggcggtggcaaaatcctcgtgctcgaaccccgccgcctcgccgcccgtaacgccgccgcc
cgcatggctgcaacactcggcgaggagatcggcgaaagcgtcggcctgcgcgcccgcctc
gaaacgcgcgtgtcgaagaaaacgcggatcgaagtgctgaccgaaggcgtattcacccgc
cttatcctcgacgacccggcgctcgacggcatcggcgccatcctcttcgacgaattccac
gagcgctcgctcgaagccgatctcggcctcgcactcgcccgcgacacacagacgagcctg
cgccccgacctgcgcctcgtcgtcatgtcggcgacccttgcgggcaagccggtcgctgaa
ttgctgggcggcgctccgctcgtcaccagcgaaggccgcagcttccccgtcgaaacgcgc
tacctcggcaaagatccgacacgccgcctcgaagaccggatggcggatgctatcgcgcgc
gcactgcgcgccgaaacgggatccattctcgcgttcctccccggccagggcgaaatccgc
cgcacggccgaaagcctccgcgaacgcctcgaccctgcggacgcgatcgtcgcgcccctc
tacggcgcgctcgaccgccgcgaccaggaccaggccatcgcaccagccccgccaggcgca
cgcaaggtcgtgctcgcgaccgccattgccgaaacctcgctcaccatcgagggcatccgc
gtcgtgatcgactgcggcgtggcccgcgtgccgcgctacgacccagacgtgggcatcacg
cgcctcgcgaccgttcgtgtgtcccgcgcctcggccgatcagcgccgcggccgcgccggc
cgtctcggcctcggcgtctgctaccgcctctgggacgaagccgagaccgcgagcatgccc
gccttcgcggagcccgaaatccgctcggccgacctcgcaccgctcctgctcgattgcgcc
gattggggcgtcaccgatccctggacgctctcctggctggatccaccggcaacggccgcc
atcgatgccgcgcgcgaagaactcacgaatctcggcgcactcgacgccgacggccgcctc
acggaaactggccgcagcctgcgcgcgctgccgcttccgccgcgccttgccgtcatggtg
atccaagccgcccgcgtcggcgcggaacgccacgcagccgacatcgccgccgtcctcgtc
gagcgcggcctcggtggcacgggcgcgaacctcgatcagcgcatcgaagcctttcggcgc
gaccgcacaccccgcgcgaccgacatgcgccgccttgcggagggttgggccaagacggca
cgcgccgcatcgcccaccatcaatgacgcaaacgacggcgaagccccctccacggccgcc
ctcctcgccctcgccttccccgaacgcatcgccaaggcgcgcggccctcacggccaattc
ctgctcgccaacggccgcggcgcaacaatggacgccgccgagccgcttgcgcgggcgccg
ttcctcgtaattgccgaaatgcagggcacggccgccgcaacgcgcatcctgctcgcggca
gaaagcagcgacgccgaaatcgcgcgtctcgcccgcaatcgcatcgccgaacgtgaggaa
atcgtcttcgaccctgccgccgcagcgatccgcacccgccgcgtgcgccgcctggatgcg
atcacgttatcgagcgacccgcgtccgccggaaccgggccccgaatcggaagcagccctc
gctcaaggtctcgcagctctcggcgcccagcgcctgccgtggaccaaacaccagcaccaa
ctccgcgaccgtgtcgctttcttgagaaacgctgcagaggacgagacatggcccgacctg
tcggacgcagctctcacagcagcacttcccgagtggctcggcccttacctttctggaaag
acgcgcctagccgacatcgccgccgacgatctcgcacaagcattggatgggctgatccct
tggccgctcaagcagcggctcgacgccgaggcgccgacgcatttcgaggcccccaccggc
cagcgccaccccatcgactacaacggccccggtgcgcccgcactccatatccgcgtccag
gagctttacagcctgacgcgccacccaacggtggcgggtggccggctaccgctcacgttg
catctgctctcgcccgcccatcgcccgatacaggtcacacgcgacctgcccggattttgg
aaaggatcgtggcagtccgttaaagctgagatgaaaggccgttatccgcgccacccgtgg
cccgacgacccggccgccaccgcaccgacgacccgcgcgaagccgcgcggcacctga
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