Hyphomicrobium nitrativorans: W911_08830
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Entry
W911_08830 CDS
T02943
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03410
Base excision repair
hni03430
Mismatch repair
hni03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W911_08830
03430 Mismatch repair
W911_08830
03440 Homologous recombination
W911_08830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_08830
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
W911_08830
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
W911_08830
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
W911_08830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHB48476
UniProt:
V5SC64
LinkDB
All DBs
Position
1838543..1840405
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AA seq
620 aa
AA seq
DB search
MTALRKVRAASVGEGSGAAFLGVTQSARGYRWQETLEPQRANEALAISQQHGLPELLGRV
LAARGVRLDEVPVFLDPTIRALMPDPSSLTDMDKAARRLADAVVRREPVAIFGDYDVDGA
ASSALVARFLAHHDVPRRIYIPDRLTEGYGPNAAAIDQLIGEGAKLIVTVDCGTTSVDVL
DGATARGVDVLVVDHHQADERLPAVHALVNPNRLDDISGQGHLCAAGVVFLVLVATAREL
RQRGYYGAKQGEPPLMSELDLVALATVADVVPLKGLNRAYVTKGLQVMRARDNVGLRALQ
DAAGLGEAPSAYHLGFILGPRINAGGRIGDAGLGARLLSTEDDTEAARIAALLDRLNKER
KEIEQAALEEATAMADRMIDETPDLGILIVGSPEWHRGVVGLIASRLTERFKRPSCVISW
DEAARGGGVNGTGSLRSVAGIDIGGSVRRAVAAGLLLKGGGHAMAAGLTVEKERLAALQV
FFAAELSGSAARLAARASLSVDGALVPSAVNEALIDLLERAGPYGQGNPQPRFVFPAHRV
KFAKPVGTAHIRCVLEAGDGSRLDAVAFRAAGQPLGELLMASAGGLPVHVAGQLRRDTWG
GRNRIELQIEDAADPRAQEA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgacggcacttcggaaggtgcgggcagcgtccgtcggcgagggctctggagcggcgttt
ctcggcgtgacgcaatccgcgcgcggctaccgctggcaggagacgctagagccgcagcgc
gccaacgaggcgcttgcgatcagccagcagcacgggctgccggagttgctcggccgtgtt
cttgcggcgcggggcgtgcggctcgacgaggttcccgtttttctcgatccgacgatccgg
gcgctgatgcccgacccctcctcgctgaccgacatggacaaggccgcgcgccgccttgcg
gacgcggtcgtgcggcgggagccggtcgccatcttcggcgattacgatgtggacggggcc
gcctcgtcggcgctggtcgcgcggttcctcgctcatcacgacgtgccgcggcggatctac
attcccgaccgtctgaccgagggctatggaccgaacgcggccgcgatcgatcaactcatc
ggcgaaggcgcgaagctcatcgtgacggtggactgcgggacgaccagcgtggatgtgctc
gacggcgcgacggcgcgcggcgtcgatgtgctggtggtcgatcaccatcaggcggacgag
cggctgcctgcggtgcacgcgctggtcaatccgaaccggctggacgacatatccgggcag
gggcatctctgcgcggcgggtgtcgtgttcctggtgctcgtcgcgaccgcgcgcgaactc
aggcagcgcggatattacggcgcgaagcagggcgagccgccgctgatgagcgaactcgat
ctcgttgcgttggcgacggtggcggacgtggtgccgctgaaggggctcaaccgcgcctat
gtcaccaagggcctccaagtgatgcgcgcgcgcgacaacgtggggcttcgcgcgctgcag
gatgcggcgggtctcggagaagcgccgtccgcctaccatctcggtttcattcttgggccg
cgcatcaatgcgggcggacgcatcggggatgcgggcctcggcgcgcggctgctctcgacg
gaggatgacacggaggctgcgcggatcgcggcgctgctcgaccgtctcaacaaggagcgc
aaggagatcgagcaggccgcgctcgaagaggcgacggcgatggcggaccgcatgatcgac
gagacgccggatctcggcattctgattgtcggctcgcccgagtggcatcgcggtgtcgtc
ggtctcatcgccagccgcctgaccgagcgtttcaagcggccctcgtgcgtgatctcctgg
gacgaggcggcgcgcggcggcggcgtgaacgggaccggatcgctgcggtcggttgcgggg
atcgacatcggaggatcggtgcgccgcgcggtggcggccggattgcttctcaagggtggc
ggacacgcgatggcggcggggctgaccgtcgagaaggagaggctcgcggcgcttcaggtt
ttttttgcggccgagctttccggatctgcggcgcggctggccgcgcgtgcgtcgctgtcg
gtcgatggggcgcttgtgccctcggccgtgaacgaagcgctcatcgatctcctggagcgg
gcgggaccttacgggcagggcaatccgcagccgcgcttcgtgtttccggcgcaccgggtg
aagtttgcgaagccggttgggacggcgcacattcgctgcgtgcttgaggctggcgacggc
tcgcggctcgacgcggtggctttccgggcggccggacagcctctgggcgagcttctgatg
gcctcggcgggggggcttcccgttcacgtggccgggcagcttcggcgcgacacgtggggc
gggcgcaaccggatcgagcttcagatcgaggacgcggccgatccccgggcgcaggaggca
taa
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