Hyphomicrobium nitrativorans: W911_08870
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Entry
W911_08870 CDS
T02943
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W911_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hni03019
]
W911_08870
03009 Ribosome biogenesis [BR:
hni03009
]
W911_08870
Enzymes [BR:
hni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W911_08870
Messenger RNA biogenesis [BR:
hni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W911_08870
Ribosome biogenesis [BR:
hni03009
]
Prokaryotic type
rRNA helicases
W911_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AHB48480
UniProt:
V5SEK0
LinkDB
All DBs
Position
1846164..1848221
Genome browser
AA seq
685 aa
AA seq
DB search
MTFPSVHPALGGALAARGYSAPTPVQLAVLESEAAGRDLLVSAQTGSGKTVAFGLAIAPK
LLGEAERLPEASAPMALVIAPTRELALQVQRELAWLYADTGARVVTCVGGMDARAEARQL
GYGAHIVVGTPGRLRDHLERQRLDLSKLGAVVLDEADEMLDLGFREDLEFILDATPEGRQ
TLLFSATMPRAIEALARRYQRDAVRIETLRRNEQHADIEYRAIRVAPGDVENAVVNVLRL
HEARATIVFCATRASVNRLHGRLVERGFSAVAISGELTQNERSHALQALRDGRARVLVAT
DVAARGLDLPDLALVIHADLPNDAETLLHRSGRTGRAGNKGLSTLIVPFNRRRKADGLLA
TAKLKVVWEPAPKPSDIRARDQERFLAEPFFTDAASEEETSAVRALQAHRTAEEIALALV
RVHFARLPAPEDLQEDPGPPRRDDRARPPRERFERPGFGAREREDRHHAGAPPSSREARA
PRAPRDPNRPMVWFRVDIGRERNADPRWLLPLICKAGNVTRSEVGSIKIFDRDSRFEVAQ
DVADSFEDAARGMKPNEGRISRLGASVPADAPRGDRVESPRPPRRDRDHKDRDAGRERET
RARPSSPPGGRGETWPKKAWHDRAQDRGRERTEGKAGEARDRKSDGPKRPFKGAKPFAAG
AKPKGGQKPVSKYAHKKKHRPAPQN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgacctttccgtccgttcatcccgcactcggcggcgcactcgccgcgcgcggatactcc
gctccgacgcctgtgcaactcgcggttcttgagagcgaggcggctggccgcgatctgctc
gtctcggcccagacggggtcgggaaagacggtggccttcgggctggctatcgcgccgaag
ctgctgggcgaagcggaacggctgcctgaggcgagcgcgccgatggctctcgtcatcgcg
cccacgcgcgagcttgctctgcaagtgcaacgcgaactcgcttggctctacgccgatacc
ggcgcgcgcgtcgtcacctgcgtcggcggcatggatgcgcgtgcggaagcgcgtcagctc
ggctatggcgcccacatcgtcgtcggcacgcccgggcgtctgcgcgatcacctcgaacgg
cagcggctcgacctcagcaagctcggagccgtggtgctcgacgaagccgacgagatgctc
gatctcggatttcgtgaagatctggaattcattctcgacgcgacgccggaaggccggcag
acgctgcttttctcggcgaccatgccgcgcgccatcgaggcgctggcgcggcgctaccag
cgtgacgcggtgcgcatcgaaacgttgcggcgcaacgagcagcacgcggacatcgaatat
cgcgccattcgtgtcgccccgggcgatgtcgagaacgcggtggtcaatgttctgcgtctc
cacgaggcgcgtgcgacgattgtgttctgcgcgacgcgcgcgtcggtgaaccggcttcac
gggcgccttgtcgagcgcgggttctccgctgtggcgatctccggcgagctgacgcagaac
gagcgcagtcatgcgctgcaggcgttgcgcgacgggcgtgcgcgcgttctcgtggccacc
gacgttgcggcgcgcggtctcgatcttccggaccttgcgctcgtcattcacgcagatctt
ccgaacgatgcggaaacgctgcttcatcgctcgggccgcacgggccgggccggcaacaag
gggctgagcacgctcatcgtgccgttcaatcgccggcgcaaggccgatgggctgctcgcg
acggcaaaactcaaggtcgtctgggaaccggctccgaagcccagcgatattcgcgcgcgc
gatcaggagcgctttctggccgagccgttttttaccgacgcggcaagcgaggaagagacg
agcgcggtgcgggctcttcaagcgcatcgcacggcagaggagatcgcgctcgcgttggtc
cgcgtccattttgcgcgcctgccggcacctgaagatctccaggaagatccgggaccgccg
cgccgcgacgatcgcgcccggcccccgcgcgagcgtttcgagcgcccgggcttcggtgcg
cgcgagagggaagatcggcatcatgcgggggcgccgccgtcgtctcgcgaggctcgggct
ccgcgcgcgccgcgcgatcccaatcgtccgatggtgtggttccgggtcgacatcggccgc
gagcgcaacgcggatccgcgttggctgttgccgctcatttgcaaggccgggaacgtcacg
cgctcggaagtcggctcgatcaagatcttcgatcgcgactcgcgcttcgaggtcgcgcag
gacgtggccgacagtttcgaagatgcggcgcgggggatgaagcccaacgaggggcgcatc
tcccggctcggagcatccgtgccggccgatgcaccgcgcggggatcgagtggaaagcccg
cggcctccgcggagagatcgagatcataaggacagggacgctggccgggaacgggaaacg
cgcgcgcggccgtcttcacctccgggtgggcgcggagagacgtggccgaagaaggcttgg
cacgatcgggcgcaagatcgcgggcgcgagcggaccgaagggaaagccggagaggctcgt
gatcggaagagcgacggtcccaagcgcccgttcaaaggcgccaagccttttgccgctggg
gcaaagccgaagggtgggcagaagccggtctccaaatatgcccacaagaagaagcatcgc
cccgcgccgcagaactga
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