Hyphomicrobium nitrativorans: W911_10560
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Entry
W911_10560 CDS
T02943
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
W911_10560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hni03021
]
W911_10560
Transcription machinery [BR:
hni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
W911_10560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
Sec10_N
Motif
Other DBs
NCBI-ProteinID:
AHB48736
UniProt:
V5SCV3
LinkDB
All DBs
Position
complement(2194492..2196462)
Genome browser
AA seq
656 aa
AA seq
DB search
MANAAKKDEQDTATAESQERDSPLLDLSDQAVKRLLKTAKARGYVTLDELNSVLPSEEVS
PDQIEDTMAMLSDMGINVVETDEGEEGADAAEGESDEEEGGRSVVQAGLPARSETRAEPA
ERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDEL
NDGKILLRDIIDLEATYEGPEAKAPPAVAGDSEDGAEGEGAEASESNDDDDEYENALSLA
AMEAELKPKVLETFDNIANTYKKLRKQQDKKLEQQVAGESGSRQQQKAYDKLREEIIADV
KSLSLNNARIESLVEQLYSINRRLVGLEGRLMRLADSYGVARLVFIDEYFGNELDQTWLD
RMAENGKKWGQLVKNERPTIEQIRKEIHELATETGLEITEYRRIVKAVQKGEREARQAKK
EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
AITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKV
LKIAKEPISLETPIGDEEDSHLGDFIEDRNAVLPDQAAIAANLRETTTRVLASLTPREER
VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgctgcaaagaaagacgagcaggatacggcgacggctgaatcccaggagcgc
gacagccccctgctcgacctctccgatcaggcggtcaagcggctgctcaagacggccaag
gcgcgcggatacgtgacgctcgacgagcttaactccgtgctcccctccgaagaggtctcg
cccgaccagatcgaagatacgatggcgatgttgtccgacatgggcatcaacgtcgtcgag
accgacgaaggcgaagaaggcgcggacgcggcggagggcgagtccgacgaggaagagggc
ggccgctcagtcgttcaggctggcctgcccgcgcgctcggagacgcgtgcggagccggcc
gagcgcaccgacgatccggtgcgcatgtatctgcgcgagatgggctcggtggagctgctg
tcgcgtgaaggcgaaatcgccatcgcgaagcgcatcgaggccggccgcgaagcgatgatc
gcaggtctctgcgaaagccccctcaccttccaggccatcatcatctggcgcgacgagctc
aacgacggcaagattctgctgcgcgacatcatcgatctcgaagccacctacgaagggccc
gaggcgaaagccccgcccgcggtcgccggggacagcgaagacggcgcagagggtgaaggc
gcagaggcgtccgaatccaacgacgacgacgacgagtacgagaacgcgctttcgctcgcc
gcgatggaagccgagctcaagccgaaggttctcgaaaccttcgacaacatcgcgaacacg
tacaagaagctcaggaagcagcaggacaagaagcttgagcagcaggtagccggcgaaagc
ggctcgcgccagcagcagaaggcttacgacaagctgcgcgaagagatcatcgcggacgtg
aagagcctttcgcttaacaacgcgcgtatcgaaagcctcgtcgagcagctctattcgatc
aaccggcgcctcgtcggcctcgaaggccggctgatgcggctcgccgacagctatggcgtc
gcgcgtctcgtgttcatcgacgaatacttcggcaacgagctcgaccagacctggctcgac
cgcatggccgagaacggcaagaagtggggccagctcgtcaagaacgagcgtccgacgatc
gagcagatccgcaaggagatccacgaactcgcgacggaaacgggcctcgaaatcaccgag
taccgccgcatcgtcaaggccgtgcagaagggcgagcgcgaagcgcgccaggcgaaaaag
gagatggtggaagccaacctccgcctcgtgatctcgattgccaagaagtacacgaaccgc
ggcttgcagttcctggatctcatccaggaaggcaacatcggcctgatgaaggctgtcgac
aagttcgagtaccggcgcggctataagttctcgacgtacgcgacgtggtggatccgtcag
gccatcacgcgctccatcgccgaccaggcgcgcacgatccgcatccccgtgcacatgatc
gagacgatcaacaagatcgtgcgcacgagccgccagatgctgcacgagatcggccgcgag
ccgacgccggaagagctggccgagaagctcgcgatgccgctcgaaaaggtgcgcaaggtt
ctcaagatcgcgaaggagccgatctcgctcgaaacgcccatcggcgacgaggaggacagc
cacctcggcgacttcatcgaggaccgcaacgcggtgctgccggatcaggcggcgattgcg
gcgaaccttcgcgagacgacgacgcgggtgctggcgtccctcacgccgcgtgaggagcgc
gtgctccgcatgcgcttcggcatcggcatgaacacggaccacacgctcgaagaggtggga
cagcagttctcggtcacgcgcgagcgtattcgccagatcgaagccaaggcgcttcggaaa
ctcaagcatccgagccggagccggaaactcagaagcttcctcgacaactga
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