Hyphomicrobium nitrativorans: W911_11870
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Entry
W911_11870 CDS
T02943
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W911_11870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hni03019
]
W911_11870
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_11870
Enzymes [BR:
hni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
W911_11870
Messenger RNA biogenesis [BR:
hni03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W911_11870
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
W911_11870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AHB48944
UniProt:
V5SG65
LinkDB
All DBs
Position
2469981..2472230
Genome browser
AA seq
749 aa
AA seq
DB search
MSNRTRRSVESASGVSSMPPAALRRPEPAATNLAPSASSLAEAQHVLEDVFGYKAFRLHQ
AGIIETLLSGGDVLALMPTGGGKSLCYQIPALVRAGTGLVVSPLIALMQDQVDALREAGV
RAAFLNSSQDWREQAAIEQSLIAGDLDLLYVAPERLVQERTLSLLERASIALFAIDEAHC
VSQWGHDFRPEYRQLRILAERFPRVPRIALTATADDRTRDEIARELSLERAHRFVASFDR
PNIRYTIAEMGSMSARERLWSFLSAEHPADAGIVYCLSRKSVEETADWLNRKGRPALAYH
AGLPPELRREHQARFLKEDGIVMVATIAFGMGIDKPDVRFVAHLNLPRSLEAYYQETGRA
GRDGEPANAWLAYGMQDIVQQKHWINASEGSDAYKRTQSQKLDALVGLCETTSCRRQLIL
AYFSETRAEPCGNCDNCLNPPQTTDGTELARKALSAVYRTEQRFGVGYLIDVLTGKDNER
AIRNSHDRLSVWGIGKTEDAAVWRSLFRQLVARGLLVTDDEGHGTLALTEEARPLLRGEE
TFRMRLAPAREKKSREKRASAAASTVTGADRALYDALRALRLRLATEAGLPPYVICHDKT
LAELAAKRPADEDSLHGITGLGARKIERYGAAFLGVISQFKPHPTLDNRLSATVNQTLAL
HLAGQDAERIAAERGLEIGTIYTHLAEAIEAGVIAADDVLDLDPGDLDEIHAAFERLDTL
ETGKLGPAHAALDGRFDYGVLRCILAELA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccgcacccggcgctccgtcgaaagcgcctccggggtttccagcatgccgcca
gccgccttgaggcgccccgaacccgcagcaacgaatctcgcaccctcggcaagctccctc
gccgaggcgcagcacgtgcttgaggacgtgttcggctacaaggccttccgcctgcatcag
gcaggcatcatcgaaaccctgctcagcggtggagacgtgctggcgctgatgccgaccggc
ggcggcaaatcgctctgctaccagatccccgcgcttgtccgcgcgggcaccggcctcgtc
gtgtcgccgctcatcgcgctgatgcaggatcaggtcgacgcgcttcgcgaagcgggcgtg
cgcgctgccttcctcaactcgtcccaggattggcgcgagcaggcggccatcgaacagtcc
ctgatcgccggagatctcgacctcctctacgtcgcgccggagcggctcgtgcaggagcgc
acgctctccctgctcgaacgcgccagcatcgccctcttcgccatcgacgaagcgcactgc
gtctcgcaatggggccacgacttccggcccgagtaccgccagctccgcattctcgcggag
cggtttccgcgcgtgccgcgtatcgcgcttaccgccaccgccgacgaccgcacccgcgac
gagatcgcccgcgaactctcgctcgaacgcgcgcatcgcttcgtcgcaagcttcgaccgg
ccgaacatccgctacacgattgcggaaatgggctcgatgagcgcccgcgagcgcctctgg
tcgtttctttcggccgagcatcccgccgatgccggcatcgtctactgcctctcgcgcaag
tccgtcgaagaaacggccgattggctgaaccgcaagggacgcccggcgctggcctatcac
gcgggcttgccgcccgaactccgccgcgagcatcaggcgcgcttcctgaaggaagacggc
atcgtcatggttgcgaccatcgccttcggcatgggcatcgacaagccggacgtccgcttc
gtcgcgcacctcaatctgcctcgctccctcgaagcctactaccaggagaccggccgcgcg
ggccgcgacggcgaacccgccaacgcctggctcgcctacggaatgcaggacatcgtccag
cagaagcactggatcaatgcgagcgagggatcggacgcttacaagcgcacgcaaagccag
aaactcgacgccctggtcgggctctgcgagaccacgagctgccgccgccagctcatcctc
gcctatttcagcgaaacccgcgccgagccgtgcggcaactgcgacaactgcctcaatccg
ccccagaccaccgacggcacggagctggcacgcaaggcactctcggccgtctaccgcacc
gagcagcgcttcggcgtcggctatctcatcgacgtgctcaccggcaaggacaacgagcgc
gcgatccgcaacagccatgaccggctctcggtgtggggcatcggcaagaccgaggacgcc
gccgtctggcgcagccttttccgccagctcgtcgcgcgtgggctgcttgtgaccgacgac
gaaggccacggaacgctcgccctcacagaagaggcacgcccgcttcttcgcggcgaggag
acgttccggatgcgcctcgcgcccgcgcgggagaaaaagtcacgcgagaagcgtgcgtcc
gcagccgcaagcaccgtcaccggcgccgaccgcgcgctctacgacgcgctccgcgcgctc
cgcctccgcctcgcgacggaagcgggcctgccgccctacgtcatctgccacgacaaaacg
ctcgcagagcttgcggccaagcgcccagccgacgaggacagcctgcatggcattaccggc
ctcggcgcgcgcaagatcgaacgctacggcgcagccttcctcggcgttatttcgcagttc
aagccgcaccccacgctcgacaaccgcctctcggccaccgtcaaccagacgctcgccctg
catctcgctgggcaagacgccgagcgcatcgccgccgagcgcgggctcgaaatcggcacc
atctatacgcacctcgccgaagcgatcgaagctggtgtgatcgcagccgacgacgtgctc
gacctcgaccccggggacctcgacgaaatccacgccgccttcgagcgcctcgatactctg
gaaaccggcaagctcggccccgcccacgcagccctcgacggccgcttcgactacggcgtg
ctgcgctgcatcctggccgagctcgcctag
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integrated database retrieval system
