Hyphomicrobium nitrativorans: W911_14160
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Entry
W911_14160 CDS
T02943
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hni
Hyphomicrobium nitrativorans
Pathway
hni03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hni00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W911_14160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hni03021
]
W911_14160
03400 DNA repair and recombination proteins [BR:
hni03400
]
W911_14160
Enzymes [BR:
hni01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W911_14160
Transcription machinery [BR:
hni03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W911_14160
DNA repair and recombination proteins [BR:
hni03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W911_14160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
AHB49308
UniProt:
V5SFL6
LinkDB
All DBs
Position
complement(2941263..2945486)
Genome browser
AA seq
1407 aa
AA seq
DB search
MNEITNLFKTQASVPTFDEIKISIASPDDILSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGLICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMTLKDLERVLYFENYIVIEPGISPFKEKQLLTEEQYNQAIDEHGPDSFTAG
IGAEAIRELMTGMDLGKIRDDLRQEIAEATTELKPKKLGKRLKVIESFIESGNKPEWMIL
TVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRML
QESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYARLQTLGQAATVKQAKKLVEKEKSEVWDVLDEVIREH
PVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILHPANGSPIIVPSQDIVLGLYYLSLMREKEPGEGMAFGSVGEVRHALEA
GAVSLHAKVKGRFTSYDAEGNATVELVETTPGRMILGEVLPKMSTVSFSLVNQLLTKKAI
SGMIDAVYRNCGQKETVIFCDRIMALGFHHAFKAGISFGKDDMLIPDTKSKIVADTAEMV
REFEQQYNDGLITQLEKYNKVVDAWSKCTDQIAKEMMDRISATEKDDGGREKQINSVYMM
SHSGARGSPAQMKQLAGMRGLMTKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVAQDSIITEEDCGTDRGIKVQAVVDAGQVIVSLGARVLGRTAS
EDIVAPAAKGEEPKVIVATGELIEERHAEAIEKAEVQEVRIRSVLTCETITGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTANVVDSSFIESNFNGTVKIKN
RALVKDGQGRMIAMTRTMAIVIVDQSGKELSTHKVQYGARVHVDEGDEVKRGTRLAQWDP
YTRPILTEASGKVEFEDLIDGASVREQTDEVKGSTNRVIVDWRATPRGAELKPAIVIKDA
KGKPIKVARGGDARYLLTVDAILSVDPGQDVKAGDVIARIPLASAKQSDITGGLPRVAEL
FEARRPKDHAIIAEVSGTVEFGKDYKNKQRISIKPDDESAEPVEYLIPRGKSLAVQPGDR
LERGDYIYDGNPAPHDILAIKGVEELANYLINEIQDVYRLQGVTINDKHIEVIVRQMLQK
VEITDTGETDLIKGEQIDRIEFDEVNAKIEKAGKRPASATPVLLGITKASLQTRSFISAA
SFQETTRVLTDAAVIGKSDTLEGLKENVIVGRLIPAGTGGMLRGLRRIAAKRDELISKER
ARSDAERALAGPGEAGAPARRRRRVAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagatcaccaacctgttcaagacccaagcgtcggtcccgactttcgacgagatc
aagatctcgatcgcctcgcccgacgacatcctctcgtggtcgttcggtgagatcaagaag
cccgagacgatcaactaccgcacgttcaagccggagcgtgacggtctcttctgcgcgcgc
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtat
aagggtctgatctgcgagaagtgcggcgtcgaggtgacgctggcgaaggtccgccgcgag
cgcatgggccacatcgagcttgcagcccccgtcgcccacatctggttcctgaagtcgctg
ccgagccgcatcggcctgctgctcgacatgacgctgaaggatcttgagcgcgtcctctac
ttcgagaactacatcgtcatcgagcccggcatttcgcccttcaaggaaaagcagctcctc
accgaagagcagtacaaccaggccatcgacgagcacggccccgacagcttcaccgccggt
atcggcgccgaagcgatccgcgagctcatgacgggcatggatctcggcaagatccgtgac
gacctgcgccaggaaatcgccgaagcgacgacggagctgaagccgaagaaactcggcaag
cgcctgaaggtcatcgagagcttcatcgagagcggcaataagcccgagtggatgatcctg
accgtggttccggtcatcccgcccgagctgcgtcccctcgtgccgctcgacggcggccgc
ttcgcgacctcggatttgaacgacctctaccgccgcgtcatcaaccgcaacaaccgtctg
aaacggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcggatgctg
caggagtcggtcgacgccctgttcgacaacggccgtcgcggccgcgtcatcacgggcgcc
aacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgcttccgc
cagaacctcctcggcaagcgcgtggactactcgggccgctcggtcatcgtggtcggcccc
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgcttgagctgttcaagccg
ttcatctacgcgcgtctccagacgctcggccaggctgccacggtcaagcaggcgaagaag
ctggtcgagaaggagaagtccgaggtttgggacgtgctcgacgaggtcatccgcgagcat
ccggttctcttgaaccgcgcccccacgctgcaccgcctcggcatccaggccttcgagccg
caactgatcgagggcaaggcgattcagcttcatccgctggtttgcgcggccttcaacgcc
gacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctcgaa
gcgcgcgtgctcatgatgagcacgaacaacattctccaccccgcgaacggctcgccgatc
atcgtgccgtcgcaggacatcgtgcttggcctctactatctctcgctgatgcgtgagaaa
gagccgggcgagggcatggcgttcgggtccgtcggcgaggtgcgccacgcgctcgaagcc
ggcgccgtgagcctgcacgccaaggtgaagggccgctttacgagctacgatgccgaaggc
aatgcgacggttgaattggtcgagaccacgccgggccgcatgatccttggcgaggtgctg
ccgaagatgtcgacggtgagtttctcgctcgtcaaccagctcctgaccaagaaagccatc
tcaggcatgatcgacgccgtctaccgcaactgcggtcagaaagagacggtgatcttctgc
gaccgcatcatggcgctcgggttccatcacgcgttcaaggccggcatctcgttcggcaag
gacgacatgctcatccccgacaccaagtcgaagatcgtggccgacacggccgagatggtg
cgcgagttcgagcagcagtacaacgacggtctcatcacccagcttgagaagtacaacaag
gtggtggacgcctggtcgaagtgtaccgatcagatcgccaaggagatgatggatcgcatt
tccgcgaccgagaaggacgacggcggccgcgagaagcagatcaactcggtctacatgatg
agccattcgggcgcgcgtggttcgcccgcgcagatgaagcagctcgccggaatgcgcggc
ctcatgaccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctctccgttctcgaatacttcaactcgacgcacggcgcccgtaagggtctcgccgac
accgccttgaagaccgcgaactcgggctacctgacgcgccgtctcgtcgacgtcgcccag
gacagcatcatcaccgaggaagattgcggcaccgaccgcggcatcaaggtgcaggcggtg
gtcgatgccggtcaggtgatcgtgtcgctcggcgcgcgcgtgctgggccgcacggcctcc
gaggacatcgtggcacccgctgcgaagggcgaggagcccaaggtcatcgtcgcgaccggc
gagctgatcgaagagcgccacgccgaagcgatcgagaaggccgaggttcaggaagttcgc
atccgctccgtcttgacgtgcgaaaccatcaccggagtgtgcggcaagtgctacggccgc
gacctcgcgcgcgggacgcccgtcaacatcggcgaggcggtcggcgtcatcgccgcccag
tcgatcggcgagccgggcacgcagctcaccatgcgcacgttccacatcggcggcacggcg
aacgtggtcgactcgtccttcatcgaaagcaacttcaacggcacggtgaagatcaagaac
cgcgcgctggtgaaggacggtcagggccgcatgatcgccatgacccgcacgatggcgatc
gtcatcgtcgaccaatcgggcaaggagctgtcgacgcacaaggtgcagtacggcgcgcgc
gtccacgtcgacgagggcgacgaggtgaagcgcgggacgcgcctcgcccagtgggatccc
tacacccgtccgatcctcaccgaggcttcgggcaaggtggagttcgaggatctcatcgac
ggcgcctccgtgcgcgagcagaccgacgaggtaaagggcagcaccaaccgcgtcatcgtc
gattggcgcgcaaccccgcgcggcgcggagctcaagcctgcgatcgtgatcaaggacgcc
aagggcaagccaatcaaggtggcccgtggcggcgacgcgcgctacctcctgacggtggac
gccattctctcggtggatccgggccaggacgtgaaggcgggcgacgtgatcgcgcgtatt
ccgctggcctccgccaagcagagcgacatcacgggcggtctgccgcgcgtggccgaactc
ttcgaggcgcgtcgtccgaaggatcacgcaatcatcgcggaggtgtcgggcaccgtcgag
ttcggcaaggattacaagaacaagcagcgcatctcgatcaagccggatgacgagagcgcc
gagcccgtcgaatatctaattccgcgtggcaagagcctggccgttcagcccggcgaccgc
ctggagcgcggcgattacatctacgacggcaacccggcgccccacgacatcctggctatc
aagggcgtcgaggaactcgcgaactacctcatcaacgagatccaggacgtctaccgtctg
cagggcgtgaccatcaacgacaagcacatcgaggtcattgtccggcagatgctgcagaag
gtggagatcaccgacacgggcgagacggacttgatcaagggcgagcagatcgaccggatc
gagttcgacgaggtgaacgccaagatcgagaaggcgggcaagcgtcccgcgtccgcgacc
ccggttctgctcggcataaccaaggcgtcgctgcagacgcgttcgttcatctccgcggcg
tccttccaggaaacgacgcgcgtgctgacggatgcggccgtgatcggcaagtcggatacg
ctggaaggcctcaaggagaacgtgatcgtcggccgtctgatcccggccggtacgggtgga
atgctgcgcggtctgcgccgcatcgccgccaagcgcgacgagctgatcagcaaggagcgc
gcgcgctccgacgccgagcgggctctggccgggccgggggaagcgggcgcgcccgcacgc
cgccgccgccgcgtggccgagtag
DBGET
integrated database retrieval system
