Vreelandella neptunia ATCC BAA-805: SR894_01745
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Entry
SR894_01745 CDS
T09634
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hnp
Vreelandella neptunia ATCC BAA-805
Pathway
hnp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SR894_01745 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hnp03400
]
SR894_01745 (sbcB)
Enzymes [BR:
hnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SR894_01745 (sbcB)
DNA repair and recombination proteins [BR:
hnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SR894_01745 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SR894_01745 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SR894_01745 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WQH13277
UniProt:
A0ABZ0YPP4
LinkDB
All DBs
Position
354716..356209
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AA seq
497 aa
AA seq
DB search
MAPPNAAPASFLWHDYETFGADPRRDRPAQFAALRTDADLNEIGEPIELYCKPADDYLPH
PAACLITGITPQKAQRHGLPEAEFAGEIQRHMSEPGTCVVGYNSLRFDDEVSRHLFYRNL
LDPYSREWQNGNSRWDLIDVVRAFYALRPDGIEWPLREDGAPSFKLEHLTAANGIAHEGA
HDAVADVRATIALARLLKARNAKLFDYLLGLRGKRAVAKQLDLPNAKPLLHISRRYPASR
GCSALVMPLAEHPTNPNGVIVYDLSVDPSDMLSMSAEQIRERVFVSQQDLTEGEARIPLK
VIHINRCPVVFPASALKDVEGPQQGEYGAIVARLGLDVAACRQHWKTLRDASGVAAKVAE
VFSAGYDDAPQDPDLMLYSGSFFSAADRQQMERVREMEPWDLVGQRFAFQDPRLEEMLFR
FRARSYPDTLEGEEREQWEAFRWMRINDPALAGFTLKAFAREIAQYNQQTLTDRERQILE
ELVMFVEAMMPAQAFDA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccaatgctgcccctgccagttttctatggcatgactatgaaaccttcggg
gcggatccgcgtcgcgaccggcccgctcagtttgctgccctgcgcactgatgccgatctg
aacgagatcggtgagccgatcgagctctactgcaagcccgccgatgattacttgcctcat
cctgccgcctgtttgattaccggtattacccctcaaaaagctcaacgccatggtctaccc
gaggcagagttcgctggcgagattcagcgccatatgagtgagccgggcacctgcgtggtg
ggctataacagcctgcgttttgatgacgaagtctcccgccatctgttttaccgcaatctg
ctcgacccttattcccgtgagtggcaaaacggcaattcccgctgggatttaatcgatgtt
gtgcgcgccttttatgcactgcgcccggatggcattgagtggccgctgcgcgaagacggc
gcgcccagcttcaagcttgagcacttaaccgcggcgaacggcattgcccatgagggtgcc
cacgatgcggtagccgacgtgcgcgccacgatcgccttggcccgtttgctcaaagcgcgc
aatgcgaagctgttcgactatctactcggcctgcgcggtaaacgtgcggtggccaagcag
ctcgacctacccaacgccaaaccgctgctgcatatctcccgccgttatcccgccagccgg
ggctgtagtgcgttggtcatgccgctggccgaacatccaaccaaccctaatggggtgatc
gtttacgatttgagcgttgatcccagcgatatgttgagtatgtcggcggagcagattcgt
gagcgcgtgtttgtcagccagcaggatttaaccgaaggcgaggcgcgtattccgctgaag
gtgatccatatcaaccgctgcccggtggtgtttcccgccagtgccttgaaagacgttgag
gggcctcagcagggtgagtatggtgccatcgttgcgcgcttaggcttggatgtggcggcc
tgtcggcagcactggaaaaccctgcgcgatgccagcggtgttgccgccaaggtcgccgag
gtgtttagtgcaggttacgacgatgcgccgcaagacccggatctaatgctctattcgggc
agcttcttctccgccgccgaccgtcagcagatggagcgagtgcgagagatggagccgtgg
gatttggtggggcagcgctttgcgtttcaggatccgcgcttggaagagatgctgtttcgc
tttcgtgcgcgcagttaccccgacacgttggaaggtgaagagcgcgagcagtgggaagca
tttcgctggatgcggatcaatgatccggccttggcgggctttacgcttaaggcgtttgcg
cgggaaattgctcagtacaatcagcaaaccctcactgatcgtgagcgccagattctggaa
gaactggtgatgtttgtggaagccatgatgccggctcaagcgtttgacgcctga
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