Vreelandella neptunia: SR894_04600
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Entry
SR894_04600 CDS
T09634
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hnp
Vreelandella neptunia
Pathway
hnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR894_04600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hnp03019
]
SR894_04600
03009 Ribosome biogenesis [BR:
hnp03009
]
SR894_04600
Enzymes [BR:
hnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SR894_04600
Messenger RNA biogenesis [BR:
hnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SR894_04600
Ribosome biogenesis [BR:
hnp03009
]
Prokaryotic type
rRNA helicases
SR894_04600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WQH13827
LinkDB
All DBs
Position
1007222..1008937
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AA seq
571 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESGTTTGENIEQRIVRVDGGAKLEALS
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFYQRVTASLTKGAEEQRALIERLIEEGHDPI
ELTCAFAAMARADEAPIGRLQAPRKEKPMREGASGGKPGARRERTGAPTEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILTKMARARVAGRP
LEISEDSAPAERAPRRRRDEGDAPVRRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctggctcttttgcctgccgtt
ctgtctgctgttgaatcacagggctacctagttccctcgccgattcaggcgcaaaccatt
cctgcgctgcttgaaggccgcgatatgctgggccaggcccagacgggtaccggcaaaacc
gcagcgtttgcattaccgttactgtcacgtttagaactaactcgccgcgagccgcaggtg
ttggtaatggcaccaacccgcgagcttgctcagcaagtagctgcctcgtttagtaagtat
ggccaaaacctgaaaggtctcgaagtggcgaccctatgcggtggtcaagagtaccgtgag
cagttgggcgcccttaagcgtggtgcgcaagtagtagtaggcaccccaggccgtattatt
gatcacctggatcgcggtagcctgaagcttgatggcctctccgccctggtgctggatgaa
gctgatgaaatgttgcgcatgggctttatcgacgacgtaaaacgcgtggtcgccgatacc
ccgaaagatgctcagcgcgtgttcttctcggcgacactgccgactgagattgagcgcatc
gttaaccgttacttggttaaccctgtgaaagttgcgattgagtcgggcaccacgaccggc
gaaaacatcgaacagcgcattgtccgcgttgacggtggcgctaagcttgaagcgctttcg
cgcattcttgaagtcgagccggttgatggggccatcgtctttgtgcgtacccgtgcagct
tgtaccacgctcgttgagcagttgactgctcgtggcgttaacgccgctggcctatcgggt
gatcttgatcagagcctgcgtgagcgcactattacacgcttgaagcgcggcaaagtcgac
gtgctgatcgctaccgatgtagctgcccgtggtcttgacgtgtcgcgcatcactcacgtt
atcaactacgatctgcctcaggatgcagaagcttacacgcaccgtatcggtcgtaccggt
cgtgcgggtcgtagcggtatcgcgattacctttgctggcttccgtgaaggccgcaaagtc
ggctggatggagcaggcgactggtcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctattcgtgcccaccgcgatgacgtcttctatcagcgtgtcactgcctccctgaccaag
ggtgcagaagagcagcgtgcgctgattgagcgtctgatcgaagagggccatgacccgatc
gagctgacctgtgcgtttgccgcgatggctcgcgctgacgaagcgcctatcggtcgccta
caggcgccgcgcaaagagaagcccatgcgtgaaggtgcgtctggtggtaaaccgggtgca
cgccgcgaacgcactggcgcgccgactgaaggcatgacacgctaccgcgtatcggttggc
cataaagatggcgtcaagcctggtcaactagttggtgccctcgccaacgaaggtggcatt
gaaggcgcgcgtatcggtcgtatcgatattcgcaacgctttctctgtggtcgaactgccg
agcggcttgccctcgacgattctgaccaagatggcccgtgcccgtgtggctggccgtccg
ctggaaatcagcgaagacagcgcaccggctgagcgcgccccgcgccgtcgtcgtgacgaa
ggcgatgcgccggttcgtcgtcgcgaacgcgcataa
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