Vreelandella neptunia: SR894_07635
Help
Entry
SR894_07635 CDS
T09634
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hnp
Vreelandella neptunia
Pathway
hnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SR894_07635 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hnp03019
]
SR894_07635 (rne)
03009 Ribosome biogenesis [BR:
hnp03009
]
SR894_07635 (rne)
Enzymes [BR:
hnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SR894_07635 (rne)
Messenger RNA biogenesis [BR:
hnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SR894_07635 (rne)
Ribosome biogenesis [BR:
hnp03009
]
Prokaryotic type
rRNA processing factors
SR894_07635 (rne)
BRITE hierarchy
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WQH14401
LinkDB
All DBs
Position
complement(1670121..1673615)
Genome browser
AA seq
1164 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDY
GADRHGFLPLKEISREYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLVQVWESITTEAAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHY
DVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPAS
LQTEEKAPAAAPAVKAAPVTSEQPSVIGRFIRGFAKLLGSDESSAEATPEPKVETPAPRK
PSERKTNQRSGESRQKSSRGERGDNASRNESRSDNSARPEPKAEQKTEQKAEQRSSTPRP
ASDDSSDKRSGPSRTRNRRRHPQQDDANGQESAKAPRKENHADSSSSSSKDSSSKDSATK
EGSKESTSGRSAAQKESRRDGGDKNRDSQRDETAKSSEPKNVETKQDDGKPKRTRNNPRN
RTRTQAINPQAEAEQLKLQAEAQSEAPAVTPEPAEAPEAEEQAQVAKAATNDTTIALGSD
SDVTAQPEAAAADAPEPNAEQADDATTADRPVAENAKARKSTHQRRQPKAASPTEQTSTA
ATVEQNEAVAKTSEPEATASEEPSAPSEETSATAKANAEPTESEKTDDSQQPSASEQAAP
EAIEPPADNAVDPTATIEEAASPAPFNSADTDQSSDERQPEEVSAKTQTRQEASNPEVAE
STSESASESVSAAPSTEEPANSEPQQDSAEKGDEPKSVKDTNAEDRSVEEKSAEESSAEP
KSSDDSSDGGSDNSSEKSSDELAATETPATEATAAEADAQPVASEAPAEATVTEEAPKPR
RRRTRAHNDPREKRKQAQQDTRSE
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttatcaatgcgacccagcccgaagagctgcgtgtcgctttagttgat
ggacaacgcctatacgatttagatatcgaatccggcgcaagagaacagaaaaaagccaat
atctatcgcggcaaaatcacccgtgtagagccctccttggaagccgccttcgttgactac
ggcgccgaccgacacggctttttgcccctcaaagagatctctcgcgagtactttgtcaaa
gatgtttccggacgtccgagcattaaagaagtgcttaaagagggccaagaggtcatcgtc
caggtcgataaagaggagcgtggcaataaaggcgccgcgctaactacttttgtcagcctg
gctgggcgctttttagtattgatgcccaataatccgcgtgcgggcggtatttctcgccgt
atcgaaggcgacgagcgcagccagctcaaagacgccatgggccagctcaccgtgccggat
aaaatgggcctgattgtgcgcaccgcgggcatcggtcgtaacccggaagagctacagtgg
gatttggattacctcgttcaggtgtgggaatcgatcaccaccgaagccgccaagcgccct
gccccgttcctgatctaccgggaatccaacgtcatcattcgcgccatgcgcgactaccta
cgccaggacattggcgaagtactgatcgacagccccgagattcacgctgaagcgctggcc
ttcatccgccaggtgatgccctcctatcagcagaagatcaagctctacgcggacgaagtc
ccgctattctcgcgcttccagatcgaatcacaaatcgaaaccgcctatcagcgcgaagtg
aagctgccttctggtggctcgattgtgatcgaccacactgaggcgctggtctccatcgat
atcaactccgcccgcgccacccggggcagcgatatcgaagagacggcactacagaccaac
tctgaagccgccgacgagatcgcccgccaactgcgcctgcgcgatattggcggtttggtg
gtgatcgactttatcgacatggggcctgcgcgcaaccagcgtgaagttgaaaaccgcatg
cgtgatgccctcaagctggatcgcgcacgggtgcaaattgggcgtatttcacgctttggc
ctgatggaaatgtcccgccagcgcctgcgtccctcgctgggggaaaccagcggcgtggtc
tgcccgcgctgtaatggccaaggcaccattcgcgatgttcgctcgctgtcgctgtccatc
atgcgtctgattgaagaagaggcgatgaaagagaacagcgcgcaaattcgcgccattctg
ccggtacccgtggcgacttacttgctcaatgaaaaacgcagcgtgctggcagatctagag
tctcgccagaatgttcgcgtagtactgctgcccaatcctgacatggatacgcctcactac
gacgtacagcgcctgcgtgatgatcacctggacgaggatgacacccaaagcctatcgagc
tttgagctctccaccgataccgaagtaggcaaagagccgacacccagcttcgtgccgccc
gctcaacgcgccgaagccgccgtcaagagtgttacccacaacgctcccgcgccggcatcg
ctgcaaacggaagagaaggcgcccgctgcagctccagcggtcaaagcagcacctgtgacc
agcgaacaacccagcgttattgggcgctttatccgcggcttcgccaagttgctcggtagc
gacgaaagcagcgccgaagccacgccagagcccaaggttgaaacacccgcgccgcgcaag
ccaagcgagcgcaaaaccaatcaacgcagcggcgagtcgcggcaaaagtcgtcgcgtggc
gagcgaggcgacaacgccagccgtaatgagtcgcgcagcgataacagcgcccgccccgag
cccaaagctgaacaaaaaactgaacagaaagccgagcagcgcagcagcacaccgcgtcct
gccagtgacgacagtagtgataagcgtagcggccccagccgtacccgaaaccgccgtcgt
cacccccagcaggacgacgctaacggtcaagaatcagccaaagcgcctcgtaaagagaac
catgctgatagctcttctagctcttccaaagatagctcttccaaagacagcgccaccaaa
gagggctctaaagagagcaccagcggcagaagtgcagcgcagaaagagtcacgtcgtgat
ggtggtgacaaaaaccgcgacagtcagcgcgatgaaacggccaagagttcagagcccaag
aacgtcgagaccaagcaggatgacggcaagccgaagcgtacgcgtaataacccgcgtaac
cgcacgcgcacccaggcgatcaatccccaggcagaagctgagcagttaaaactgcaggcc
gaggctcagagtgaagcgcccgcagtgacaccagagccagccgaagcccctgaggcagaa
gaacaggcacaggtggctaaagcagcgacaaatgacacaacgattgcactaggatcggac
tcggacgtcaccgctcagccagaagcggcagcagccgatgcgcctgagcccaacgccgag
caagcggacgacgcaacgaccgccgatcggcccgtggcagaaaacgctaaagcgcgcaag
tcgacgcaccagcgccgtcagcctaaagcggcttcaccaacggagcaaacgtcaactgcc
gccaccgttgagcaaaatgaggccgttgcaaagacaagcgaaccggaggccacagccagc
gaagagccgtcagcgccatctgaggagacctcagcaacagccaaggccaacgcagagccg
actgaaagtgagaaaaccgacgatagccagcagcccagtgctagtgaacaggcagcgcct
gaagccatcgaaccgcctgcagacaacgccgttgacccaacggcaactattgaagaggcg
gcctccccggcacctttcaatagtgcggatacggatcaaagcagcgacgagcgtcagccc
gaagaagtttcagctaagacccaaacccgccaggaagcgtcaaacccagaggttgctgag
agtacttctgagagcgcttctgagagtgtctccgcagccccttcaactgaagagcctgcc
aacagcgagccgcagcaagacagcgcagaaaaaggtgatgagcctaagagtgttaaagac
acaaacgctgaagacagaagcgttgaagaaaaaagcgctgaagagagtagcgctgaacct
aagagttctgatgatagctctgacggcggttctgacaatagctctgaaaagagcagtgac
gaactagcagcgactgaaacacctgcgactgaagccactgcagctgaagcagacgctcag
ccggtcgccagtgaagcacccgctgaagccacagtaacggaagaagcgcctaaaccgcgc
cgtcgccgcacccgggcccacaacgacccacgtgagaagcgcaaacaggcgcagcaagac
acacgctccgaatag
DBGET
integrated database retrieval system
