Vreelandella neptunia: SR894_12560
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Entry
SR894_12560 CDS
T09634
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hnp
Vreelandella neptunia
Brite
KEGG Orthology (KO) [BR:
hnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hnp03019
]
SR894_12560 (hrpA)
Enzymes [BR:
hnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SR894_12560 (hrpA)
Messenger RNA biogenesis [BR:
hnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SR894_12560 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
NACHT
T2SSE
PhoH
SLFN-g3_helicase
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WQH10995
LinkDB
All DBs
Position
complement(2694526..2698533)
Genome browser
AA seq
1335 aa
AA seq
DB search
MEADSIVTTDTSPAPTDSQRLASLKQAAGDVMLRDAERLERRLAGLNRRLRDNKPIRRGL
DEVERELSRAQQQLGQRESQKVALNYPPELPVVERREDIVNAIRDHQVVVVAGETGSGKT
TQLPKMCLELGRGRRGLIGHTQPRRLAARSVASRLAEELEVSLGEQVGYQVRFTDQSSPT
TLVKLMTDGILLAETQHDPLLLRYDTIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVII
TSATIDVERFAKHFGTAKTPAPVVEVTGRTYPVEVHYRPLVRDEDDEEDRTLQEGILHAV
DEIEAIEREKGWLHGPRDVLVFLPGEREIRETADTLRRAELKGTEILPLYARLSNEEQNR
VFAPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEAVSQASAN
QRKGRCGRIAEGVCIRLYSEEDFLSRPGFTDPEIQRTNLASVILSMLGLKLGDIEAFPFV
DPPDSRFVKDGFRLLFELGAVDEKQRLSPLGRKLARLPIDPRLARMVLAGVEFGSLRDVL
IVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQLRR
WCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPPPRNEDESEEQARQTRRKTSGKVH
QALLSGLLSNLGTLVENREYLGARNRKFMIHPGSGLAKKSPKWIMAFEMVETSKLFARTV
AKIDPQWIEPQAQHLVKRSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRKVHYGPIAPQE
SRELFIRRALVEGEFQTKGAFFAHNRALIDEVEALEDRARRRDILVDEDTLYDFYDQRIP
AEIVNGKGFEHWRKQAEQQEPQLLHFDIDSLKARDAEDVTQAQYPDHLILAGVAYPVSYH
FDPEAEDDGVTLTVPAAMLPQVPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPIPDW
VDAALETLVPDQRPLTEALGEFIRRRTSTRVHPDDWRLDLLEPHLIMNIRVVDHAGEILG
QGRDLRALEQRFEAAASAGAQALAEQVSHEPAVAGLPTTPLPASRVTTQAGIRVEAYPAL
VAADANEFKVALFDHPAKADAAHQEGIARLAIAKLPEQVKAIKQLPGVEKCALLFAKVGS
KQALIDDLLLAVFTQVVAQHPLPRSEGEFSQRLSATQSQLVDEAKALLVRVEAALKGHLA
VSKVLKGKLNFALALVYSDVSAQMQRLVYPGFIRDAGAWLDEYPRYTEAALIRLEKAARE
RGRDQMMMQDVQALEARFDARRESERRGRVEDPELVAFGWWLQELRVSLFAQQLGTSMVV
SVKRLEKRWQEITSV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgactcaatcgtgaccaccgacacatccccagcccccaccgatagccaacgt
cttgcgtcgctgaaacaggccgcgggcgatgtgatgctgcgcgatgcagagcggctggag
cggcggctggccggcttaaaccgtcgcctgcgcgataacaaaccgattagacgtggtttg
gatgaagtggagcgtgagcttagccgcgcccagcagcagcttggccagcgcgaaagccaa
aaggtcgccctcaactacccgccagaattgccggtggtcgaacggcgggaagatattgtt
aacgccatccgcgaccatcaggtcgtggtggtggcgggggagaccggctccggcaaaacc
acccagttgcctaaaatgtgtttggagctggggcgaggccgccgtggcttaattggccac
acccagccgcgtcgcttggctgcccgcagcgttgccagccgcctggcggaagagctggaa
gtctcgctgggcgagcaggtgggctatcaggtgcgcttcaccgaccagagcagcccgacg
accctggtcaaactgatgaccgacgggatcttgctggccgagacccagcatgatccgctg
ctgctgcgttacgacaccatcattattgatgaagcccacgagcgcagcctgaatatcgac
tttctgctcggctacctcaagcgcttactccccaaacggcccgacctaaaagtcatcatt
acctcggcgactatcgacgtggagcgctttgccaaacacttcggcacggccaaaaccccc
gctcctgtggtggaagtcaccgggcgcacctatcccgtagaagtgcactaccggccgctg
gtgcgcgacgaggacgatgaggaagaccgcacgctgcaagagggcattctgcacgcggtg
gacgagattgaagccattgagcgcgaaaaaggttggttgcacggcccccgggatgtgctg
gtgtttttaccgggtgagcgcgaaattcgtgaaaccgccgatactctgcgccgtgccgag
ctgaaaggcaccgaaatcctgcccctttacgcacggctctccaacgaagagcagaaccgc
gtgtttgcgccgcaccgcggtcggcgcatcgtactcgccaccaacgtcgcggaaacgtcg
ttgacggtgcctggaattcgctacgtgatcgaccctggcctcgtgcgtatcagccgctat
agctaccgttccaagatccagcgactgccggtagaagcggttagccaggccagtgccaac
cagcgtaaagggcgctgtgggcggattgccgaaggcgtgtgcattcgcctctatagcgaa
gaggattttctctcccgacccggctttaccgaccctgaaatccagcgtaccaacctggcc
tcggtgattctctcaatgctggggctcaagctcggcgatatcgaggcctttccgtttgtt
gatccgccggatagccgctttgttaaagacggcttcagactgctgttcgagcttggggcg
gtggacgaaaagcagcgtctttctcctctcgggcgtaagttggcgcggctgccgattgat
ccgcgcctggcgcgtatggtgctggcgggtgtcgaattcggcagcctgcgcgatgtgcta
atcgtcgtctcggcgctggccatccaagacccccgcgaccgaccggcggataaacgccaa
gccgccgaccaagctcaccagcgctggcacgacccggattccgactttgtcgccttgctg
aacctctggcacggtattgagaatgcccgcgaagcgctgtcgggtaatcagttgcgccgc
tggtgccgtgagcactacatcaactatctgcgtatgcgcgagtggcacgataccttccgc
caactgcgccaactgctgcgcgatatggatatcgacgtgcccgcgccgccgccccgcaat
gaagacgagagcgaagagcaggcgcgtcaaacacggcgtaaaacgtcgggcaaggtgcat
caggcgctactctcggggctgctctccaacctggggacgttggtcgagaaccgcgagtat
ctcggcgcccgtaatcgcaagtttatgattcatccaggctctgggttggccaagaagtcg
cccaagtggatcatggcgttcgagatggtggaaacctccaagctgtttgctcgcaccgtg
gccaaaatcgatccgcagtggatcgaaccccaggcgcagcatctggtgaagcgcagctac
agtgaaccgcattgggaaatgaaacgcgcgcaggtagtggcctttgaacaggtcacgctg
tttggtctgccgattgtggcgcggcgcaaggtacattacgggccaatcgcgcctcaggag
tcccgggaactgtttattcgccgtgcgctggtggaaggggagtttcaaaccaaaggggcc
ttctttgctcataaccgcgcgctaatcgatgaagtcgaagcgctggaagaccgcgctcgg
cggcgagatattctggtcgatgaagacacgctctatgacttttacgaccagcggatcccg
gcggagatcgtcaacggcaagggctttgagcactggcgcaagcaggccgagcagcaagag
ccgcaattactccacttcgatattgattcacttaaagcgcgtgacgcggaggacgtgacc
caggcgcagtaccccgatcatttgattctggcgggcgtcgcgtatccagtcagttaccac
tttgaccctgaagccgaggatgacggtgttaccctgactgttcccgccgccatgctgccc
caggtgccggtgcatgccctggagtggctggtgcctgggctgctgcgtgaaaagtgtatt
gcgttgctgaagtcactgccgaaaagcatccgccgccaggtggtgccgattcccgattgg
gtggatgcggcgctggaaacactggtacccgatcagcgcccgttaaccgaggcgttgggt
gagtttattcgccgccggacatcgacgcgggtgcatcctgacgattggcgcctagacttg
ctcgaaccgcatctgatcatgaatattcgcgtggtcgatcatgcgggcgaaatcctaggg
caggggcgcgatctgcgtgcccttgagcagcgctttgaagcggcagccagcgcaggcgcc
caggccctggctgaacaggttagccatgagcccgctgtggccgggctgcccacgacaccg
ctgccagcttcgcgtgttaccacccaggcaggtattcgcgtagaggcgtatcctgcattg
gttgcagctgacgccaacgagttcaaggtagcgctgtttgatcacccggcaaaagctgat
gccgctcaccaagagggcattgcccggctggcgattgccaagcttcccgaacaggttaaa
gcgattaagcaactgccgggtgttgagaagtgcgcgctgctgtttgccaaagtgggcagt
aagcaagctttgattgatgacctgctgctagctgtgtttactcaggtagtggctcagcac
cccctgccacgctcggaaggagagtttagccagcgcctaagcgctactcagagccaactt
gtggacgaagcgaaagcgctgttggtacgggtagaggccgcgctaaaaggccacctggcg
gttagtaaggtgctcaaagggaaacttaattttgcgctggcgctggtatatagcgatgtt
agcgcgcagatgcagcgactggtttacccaggctttatccgcgatgcgggcgcctggctt
gacgaatacccacgctacaccgaggcggcgctcattcggcttgaaaaagccgcccgtgag
cgcggtcgcgatcaaatgatgatgcaagacgtccaggcattagaggctcgctttgatgcc
cgccgggaaagtgagcgacgcggaagggtggaagaccctgagttggttgcttttggctgg
tggttgcaagagcttagagtgtcgctattcgcgcagcagttggggacgagcatggtggtg
tcggtaaaacgactggaaaaacgctggcaagagatcactagcgtttag
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