Hymenobacter nivis: DDQ68_00990
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Entry
DDQ68_00990 CDS
T05498
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hnv
Hymenobacter nivis
Pathway
hnv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDQ68_00990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_00990
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DDQ68_00990
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDQ68_00990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
DUF4350
AAA_16
RsgA_GTPase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AWM31486
UniProt:
A0A2Z3GK26
LinkDB
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Position
237679..240216
Genome browser
AA seq
845 aa
AA seq
DB search
MADAPQKTTNEPLAGYVTVRGAREHNLQNVDVDIPRDALVVFTGVSGSGKSSLAFGTLYA
EAQRRYLESVSPYARRLFHQMAVPEVDSINGLPPAVALQQQRGAPSTRSSVGSVTTLANL
LRMLYSRAGDYPKGQSIVYAEGFSPNTPEGACPTCHGLGRVYEVTEQTMVPDPMLTIRER
AIAAWPQAWGGQNQRDILVTLGYDVDTPWQDLPQKDRDWILFTDEQPVVPVYPGYSPAQT
QRALKRQEPPNYMGTFTGVKRHVLHTFATTQSALMKKRVAQYMLSQECPTCHGKRLRREA
LAVTFAGLDIADFSRLPLKRLAEVLGPYAADKVLSKKAEAAAPEKAIVTQRIAADLGTRL
AVLLDLGLGYLSLERGTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL
LTALAGLKRAGNSLFVVEHNLDVVRQADWLVDVGPQAGALGGRILYSGPPAGLAAVAESQ
TRRYLFDAAKPVLPVPRPATGWLQLRGVTRHNLSNLDVDFPLGVFTAVTGVSGSGKSSLV
SQVLVELVAAQLGQALSAEDEEGDPLERAVPEATGGHLASGMAGIRRLVQVDQRPIGRTP
RSNLATYTGLFDPVRQLFASTPAARQRRYDAGRFSFNVAKGRCENCQGEGFVMVELLFLP
SVYAPCPVCHGARYNDKTLEIKYKDKSIADVLGLTVDDAWAFFIEETTVRRPLTVLRDVG
LGYLRLGQPATELSGGEAQRVKLATELQRPARGHTLYVLDEPTTGLHPSDVERLLLQLNA
LVEAGNTVVVVEHEMRVIAAADWLIDIGPGAGDEGGKVVIAAPPAAVAGAPESRIAPYLA
RFLAG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctccccaaaaaactactaatgagccgcttgccggctacgtgaccgtacgc
ggcgcccgcgagcacaacctgcaaaacgtggacgtggacattccgcgcgacgcgctggtg
gtattcaccggtgtgtcgggctcgggcaaatccagcctggcgtttggcacgctctacgcc
gaggcccagcgccgttacctggagtcggtgtcgccctacgcgcggcgcctgttccaccaa
atggcggtgcccgaggtggatagcatcaacgggctgccgccggccgtggcgttgcagcag
cagcgcggggcccccagcacccgctcgtcggtgggctcggtcacgacgctcgccaaccta
ctgcggatgctgtactcgcgggccggcgattacccaaagggccaaagcattgtgtacgct
gaaggattttcgcccaacacgcccgagggtgcctgccccacctgccacggcctgggccgc
gtgtacgaagtgacggagcagacgatggtgcccgaccccatgctcaccatccgcgagcgg
gccattgcggcctggccccaggcttggggcggccagaatcagcgcgatattctggtgacg
ctgggctacgacgtggacacgccctggcaagatttgcctcaaaaggaccgcgactggatt
ctgttcaccgacgagcagccggtggtgcccgtgtaccccggctactcgcccgcgcagacg
cagcgggccctgaaacggcaggagccgcccaactacatgggcactttcacgggcgtgaag
cggcacgtgctgcataccttcgccaccacccagagcgccctgatgaagaagcgcgtggcc
cagtatatgctcagccaggagtgccccacctgccacggcaagcgcctgcgccgggaggcc
ctggccgtgaccttcgccgggctcgacatcgccgatttctcgcgcctgccccttaagcgc
ctggccgaggtgctggggccctacgccgcggataaagtgttgagcaagaaggccgaagcc
gccgcccccgagaaagccatcgtcacccagcgcatcgccgccgacctggggacccgcctg
gccgtgctgctcgatttgggcctgggctacctgtcgctggagcgcggcacgcccacgctc
tcgcccggcgagctgcaacggctgcgactggccacgcagctgtattccaacctgttcggg
gtggtgtacgtgctcgacgagccctccgccggcctgcacccggccgacactgaggccctg
ctcacggccctggccggcctgaagcgcgcgggcaactcgctgttcgtggtcgagcacaac
ctcgacgtggtgcgccaggccgactggctcgtggacgtggggccccaggccggggccctg
ggcggccgcatcctctacagcggcccgcccgccggcctggccgccgtggccgagtcgcaa
acccgccgctacctgttcgatgccgcgaagcccgtgctgcccgtgccgcgcccggccacc
ggctggctgcaactgcgcggcgtcacgcgccacaaccttagcaacctggacgttgacttc
ccgctgggcgtgttcacggccgtcacgggcgtgtcgggctcgggcaagagcagccttgtg
agccaggtgctggtggagctggtggcagcccagctcggccaggccctgtccgcggaagac
gaggaaggcgaccccctggagcgcgccgtgcccgaggccaccggcggccacttggccagc
ggcatggccggcatccgccgcctggtgcaggtagatcagcggcccatcggccgcacgccg
cgctccaatttggctacctacacgggcctgttcgaccccgtgcggcagctgtttgccagc
acccccgcggcccggcagcggcgctacgacgccggccggttctcgttcaacgtggccaag
gggcgctgcgaaaactgccagggcgagggcttcgtgatggtggagctgctgtttctaccc
agcgtgtacgcgccctgcccggtctgccacggggcccgctacaacgataaaaccttggaa
atcaagtataaggacaaaagcattgccgacgtgctgggcctgaccgtggacgatgcctgg
gccttcttcatcgaagagaccaccgtgcgccgacccctcaccgtgctgcgcgacgtgggc
ctgggctacttgcgcctgggccagcccgccaccgagctgagcggcggcgaggcgcagcgc
gtgaagctcgccactgagctgcaacgccccgcccgcggccacactctctacgtgctagac
gagcccaccaccggcctgcacccctccgacgtggagcgactgcttctccaactaaacgcc
ctggtcgaagccggtaataccgtcgtagtagtggagcacgaaatgcgtgtcatcgccgcc
gccgactggctcatcgacatcggccccggcgccggcgacgaaggcgggaaggtggtcatc
gccgcgcccccggccgccgtagctggggccccagaaagccgcattgcgccgtacctggcg
cggttcctggcggggtag
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