Hymenobacter nivis: DDQ68_11520
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Entry
DDQ68_11520 CDS
T05498
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03030
DNA replication
hnv03430
Mismatch repair
hnv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDQ68_11520
03430 Mismatch repair
DDQ68_11520
03440 Homologous recombination
DDQ68_11520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hnv03032
]
DDQ68_11520
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_11520
Enzymes [BR:
hnv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DDQ68_11520
DNA replication proteins [BR:
hnv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DDQ68_11520
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DDQ68_11520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
IgD3_Trs65
Motif
Other DBs
NCBI-ProteinID:
AWM33357
UniProt:
A0A2Z3GNW1
LinkDB
All DBs
Position
2604705..2608388
Genome browser
AA seq
1227 aa
AA seq
DB search
MPVFSHLHSHTQYSLLDGQASIGALMKKAQADGMPAVALTDHGNMFGAFNFVAEANKYNV
KPIVGCEFYLVEDRHKKAFSREKGERDVRRHQLLLAKDQAGYHNLSKLCSLSFIEGSYSK
FPRIDKELLVQYHEGLIATSCCIGAEIPQTILFRSETEAEEKLKWWLDLFGDDYYIEIQR
HGLMNFDGTGKSQEDVNQVLLRLAHKHGVKVICTNDSHYVDQTDFAAHDLLLCVNTGEEH
SIPVGDIRTNYYTLLTTDGQVRYDLLDNLRQNHGRDERAQKQLRRIDEELQKPKPHTRFG
FANDQFYFKKQAEMNALFADVPESVDNTNEIVDKITPPKLARDILLPNFPLPVQFANADE
FLRDLTFKGAFEGARPRYSERTPEVEERLNYELRIIQTMGFAGYFLITQDFINHGRSVGV
AVGPGRGSAAGSAVAYCVGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQKVID
YVVQKYGKTQVAQIITFGTMAAKSSIKDVARAMELPLPQTNDLTKMVPEQVGTTLAKAFA
ENMELDMIRRDESPDNLKGQILRLAVQLEGSVRNTGIHAAGVIIAPDDITKYIPVSTSKD
SDLLVTQFDGKVIESAGMLKMDFLGLKTLTIIVDAIRLIERNHGVKIDIDDIPLDDEKTY
AMYQRGDTIGTFQFESEGMRQYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKHGRE
PVEYPHDLLEPILSYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMALER
EKFTKGALELHSIPAKKANEVFDVMEKFAEYGFNRSHSAAYSVVAYQTGYLKANYPAEYM
AAVLTNNMGDIKKVTFFIEEARKQGVDVLGPDVNESLLKFNVNQEGKIRFGMAAVKGAGE
LAVECMVEEREKAGPYSDIFDFAKRVNLRTVNKKTFESLAQAGAFDDFGKHRRLYLDAPA
GDQSLIEKAMKLGQQHAAAKESSQHSLFGASAFGAVAAPLPKMHEMEPWTKTEQLRREKE
VVGFYLSGHPLDSYKLELDAYCTCGLEQVEKHKNKEINVAGLITNVAFKTTKMGQSFATF
TLEDYETSISPALFRDDYTRFAPLINPRNYANEQVPPMFVRLKQELRRGTQDQWDLRILN
MQPLSEVAEKLSKGVRVRLDLRTVTGPLLDRLEEAIQAAPGRKRLEIQFAEPHEHLAVDM
FSRKFQIEPKVFIEKMQEMEIDACQLI
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttctcgcacctccacagccacacccaatactcactgctcgacggccaggcc
agcattggagccctcatgaaaaaggcccaggccgacggcatgcccgccgtggccctcacc
gaccacggcaatatgttcggggccttcaacttcgtggccgaggccaacaagtacaacgtg
aagcccatcgtgggctgcgaattttacctggtggaggaccgccacaaaaaagccttcagc
cgcgagaagggcgagcgggacgtgcgccgccaccagctgctgctagccaaggaccaggcc
ggctaccataacctgagcaagctgtgctcgctgagcttcatcgagggctcgtactcgaaa
ttcccgcgcatcgacaaggaattgctggtgcagtaccacgagggcctcattgccaccagc
tgctgcatcggggccgagattccgcaaaccatcctgttccgctccgaaaccgaggccgag
gaaaagctgaagtggtggctcgacttgttcggcgacgactactacatcgaaatccagcgg
cacgggctgatgaacttcgacggtaccggcaaaagccaggaagacgtgaaccaagtgctg
ctgcgcctggcccacaagcacggcgttaaagtcatctgtaccaacgactcgcactacgtg
gaccagaccgacttcgcggcccacgacctgctgctgtgcgtaaacaccggcgaggagcac
agcatcccggtcggcgacattcgcacgaattactacaccctgctcaccaccgacggccag
gtgcgctacgacctgctcgataacctgcgccagaaccacggccgcgacgagcgggcccag
aagcagttgcgccgcatcgacgaggaactgcagaagcccaagccgcacacccgcttcggc
ttcgccaacgaccagttctatttcaagaagcaggcggagatgaacgcgctgttcgccgac
gtgccggagagcgtggacaacacgaacgagattgtggacaaaatcacgccgcccaagctg
gcgcgcgacatcctgctccccaacttcccactgcccgtccagttcgccaacgccgacgag
ttcctgcgcgacctcaccttcaagggtgcctttgagggggcccggccgcgctactccgag
cgcacgcccgaagtggaggagcgcctgaactacgagctgcgcatcatccagacgatgggg
tttgcaggctactttcttatcactcaagattttattaatcacggccgctcggtgggcgtg
gcggtgggccccgggcggggctcggcggcgggctcggcggtggcctactgcgtgggcatc
accaacatcgaccccatcaagtattcgctgctgttcgagcgcttcctgaacccggagcgc
gtgtcgatgcccgatatcgacattgacttcgacgacgtgaaccgccagaaggtcatcgac
tacgtggtgcagaaatatggcaaaacccaggtagcccaaatcatcaccttcggcacgatg
gcggccaaaagctccatcaaggacgtggcccgggccatggagctgcccctgccccagacc
aacgacctcaccaaaatggtgcccgagcaggtgggcaccaccctggccaaagccttcgcc
gaaaatatggagctggacatgatccggcgcgacgaaagccccgacaacctcaagggccag
attctgcggctggccgtgcagctcgaaggctcggtacgcaacacgggcatccacgcggcg
ggcgtcatcatcgcccccgacgacatcacgaagtacatcccggtttcgacctccaaggat
tcggacctgctcgtgacgcagttcgatggcaaggtgattgagagcgccgggatgctgaag
atggactttctgggcctcaaaaccctgaccatcatcgtagatgccatccgcctgattgaa
cggaaccacggcgtgaagatcgacatcgacgacattccgctcgacgacgagaagacctac
gccatgtaccagcgcggcgacacgattggcacgttccagttcgaatccgagggcatgcgc
cagtacctcaaagacctgaagcccaccaatatcgaggacctgattgccatgaacgccctg
taccgcccgggccccatgcagttcatcccaaacttcatcaaccgcaagcacgggcgggag
ccagttgagtacccgcatgacctcctggaacccattctatcttattctcagggtattatg
gtttatcaagaacaaatcatgcagacggcgcagattctggccggctactcgttgggtgga
gccgacttgctgcgccgcgccatgggcaaaaaggacatgaaaaagatggccctggagcgc
gagaaattcaccaagggggccctggagctgcacagcattccggcgaagaaggccaatgag
gtgttcgacgtgatggagaagtttgccgagtacggcttcaaccgctcgcactcggccgcc
tactcggtggtagcctatcagactggttacctgaaggctaattaccctgccgagtatatg
gccgccgtgctcaccaacaacatgggcgacatcaagaaggtgaccttcttcatcgaggaa
gcccgcaagcagggcgtggacgtgctgggccccgacgtgaacgagagcctgctgaaattc
aacgtgaaccaggagggcaaaatccgcttcggcatggccgccgtgaagggcgccggtgag
ctggccgtggagtgcatggtggaagagcgcgaaaaggcggggccctactccgacattttc
gacttcgccaagcgcgtgaacctgcgcaccgtgaacaagaaaaccttcgagagcctggcc
caggccggcgcttttgacgacttcggcaagcaccgccgcctgtatctcgatgcaccggcc
ggcgaccagtcgctcatcgagaaggccatgaagctgggccagcagcacgccgctgccaag
gagagcagccagcacagcctgttcggggcctcggcctttggggcggtggccgcgccgctg
cccaaaatgcacgagatggagccctggaccaagaccgagcagctgcgccgcgaaaaggaa
gtggtgggcttctacctctcgggccaccccttggacagctacaagctggagttggacgcc
tactgcacctgcggcctggagcaagtggaaaagcacaaaaacaaggaaatcaacgtggcc
ggcctcatcaccaacgtggccttcaaaaccaccaaaatgggccagtcgttcgccaccttc
accctagaggattacgaaacgagcatcagcccggcgctgttccgcgacgactacacgcgg
tttgcgccgctcatcaacccccgcaactacgccaacgagcaggtaccgcccatgttcgtg
cgcctcaagcaggagctgcgccgcggcacccaggaccagtgggacctgcgcatcctcaac
atgcagccgctgagcgaggtggccgaaaagctaagcaagggcgtgcgcgtgcgcctcgac
ctgcgcaccgtgacggggcccctgctcgaccggctggaggaagccattcaggccgcgccc
ggccgcaagcgcctcgaaatccagttcgccgagccccacgagcacttggccgtggatatg
ttctcgcgcaagtttcaaattgagcctaaagtatttatcgaaaaaatgcaggagatggaa
atagacgcctgtcagctcatctga
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