Hymenobacter nivis: DDQ68_12115
Help
Entry
DDQ68_12115 CDS
T05498
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hnv
Hymenobacter nivis
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hnv03019
]
DDQ68_12115 (hrpB)
Enzymes [BR:
hnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DDQ68_12115 (hrpB)
Messenger RNA biogenesis [BR:
hnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DDQ68_12115 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
CON_HrpB
AAA_19
AAA_11
AAA_30
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWM35402
UniProt:
A0A2Z3GTJ4
LinkDB
All DBs
Position
2739929..2742646
Genome browser
AA seq
905 aa
AA seq
DB search
MPDLPIIAALPALRDALAAHARVVLEAPPGAGKTTVVPLALLAAEWRGPQDKILVLEPRQ
LAVRGAAARLAQLLGEPVGRTIGYRVRLDSKVSQDTRVEVITEGILTRMLQDDPALEGVA
CVVFDEFHERSLNADLGLALALDAQAVLRPELRILIMSATLEAQRLGQWLPAPVVSSAGF
LFPIDTHYLDPRRAAALPNRPGERLATLVPAQVRAALGAHPVGDVLVFLPGVADLQRVAR
ALDSLPDAIDLHLLHGELPLDVQDAALRPARAGRRKVILATSIAETSLTIEGVRVVVDGG
FARVPRFVPRTGFTTLETVPVARAAADQRRGRAGRLAPGTCYRLWTEAEHHQLPLHRAPE
IQAADLSALALELALWGTANPADLRWLDAPPAAAYAQAQELLVRLGAISSAQLSANSEQL
VGADNQPKPASATVNSSLTTINCPFKPTAHGRQLARLGLPPRLGHLVVRGQELGQGPAAT
ALAALLAERDLLRWATPNDPRPLPPDLRLRLEALASGRAPLPGLALHPATLQRVRDVARH
LQSRQGPKGHPLIHSFTHSPIGLLTALAYPDRVAQRETDGRLRLATGQRVELRTEDVDPQ
AEFFAVAHLAGTAATPRATLAAPVSREELETAFAGQITTTDEVRYDPATQRVTGRRVRRL
GALRLAETVIGQPDAALVAGALLAYLQEAGLSKLNWTPGARQLQQRLEFLRYQFPEPAAA
GGEAFTTAQAPSTKHQAPPWPASDEATLLRELPQWLGPHLAGFKSLDQVQRLDLTEPLLA
RLPGGWAQRQALDRLAPAALEVPSGSHVTLDYAEPTAPVLAVKLQELFGLTETPTVAGGR
VPLLLHLLSPGGRPAQVTRDLRSFWEKGYFDVRKDLKGRYPRHPWPDKPMEHIPTKLTKR
RLDNL
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgatttgcccatcatcgcggcactgccagccctgcgcgacgctcttgccgcccac
gcccgcgtggtgctggaggccccgcccggcgcgggcaaaaccacggtggtgccgctggcg
ctgctggctgccgagtggcggggcccccaggataaaattctggtgttggagccgcgccag
ctggccgtacgcggggccgctgcccgcttggcccagctgctgggcgagcccgtgggccgt
accatcggctaccgcgtgcggctcgacagcaaagtgagtcaagacacccgcgttgaggtc
attaccgaaggcattctcacccggatgctgcaagacgacccagcgctggagggcgtggcc
tgcgtggtgttcgacgaatttcacgagcgcagcctgaatgccgatttgggcttggccctg
gccctggatgcccaagccgtgctgcggcccgagctgcggattctcatcatgagcgccacg
ctggaggcgcagcggctggggcagtggctgcccgcgccggtggtgtcgtcggccggtttt
ctatttccgattgatacgcactacctcgacccgcgccgggccgccgccctgcccaaccgg
cccggcgagcggctggccacgctggtgccggcccaggtgcgcgccgcgctgggggcccac
ccggtgggcgacgtgctggtattcctgcccggcgtggccgacttgcagcgcgtcgcccgg
gccctcgactcgctgcccgacgccatcgacctgcacctgctgcacggcgagctgccactg
gacgtgcaggacgccgccctgcgcccggcgcgggccggccggcgcaaggtcatcctggcc
accagcatcgccgaaaccagcctcaccatcgagggcgtgcgcgtagtggtggacggcggg
tttgcccgggtgccgcgcttcgtgccgcgcaccggcttcactaccctcgaaaccgtgccc
gtagcccgcgccgccgccgaccagcgccgcggccgcgccggccgcctggcccccggcacc
tgctaccgcctctggacggaggccgaacaccaccagctgccgctgcaccgggcccccgaa
atccaggccgccgacctcagcgccctggccctggagctggccctgtggggcaccgccaac
ccggccgatttacgctggcttgacgcgccacccgccgccgcctacgcccaagcgcaggag
ctactggtgcggctgggggcaataagcagtgcacagttatcagcaaacagtgaacagtta
gtcggtgctgataatcaacccaagccggcttcagcaactgttaattcctcactgacaact
attaactgtccgttcaagcccaccgcccacggccgccagctggcgcggctgggcctgccg
ccgcgcctgggccacctcgtggtgcgcggccaggagctgggccagggccccgccgccacc
gccctggccgccctcctggccgagcgcgacctgctgcgctgggccacacccaacgacccg
cgcccgctgccgcccgacctgcgcctgcgcctcgaagcgctggccagcggccgggcaccg
ctgcccggcctggccctgcacccagccaccttgcagcgcgtgcgcgacgtggcccgccac
ctgcagagccgccagggcccgaaaggacatccacttattcactcattcactcattcaccg
attggcctgctcacggccctggcctatcccgaccgcgtggcccagcgcgaaaccgacggc
cgcctgcgcctcgctaccggccagcgcgtggagctgcgcacggaggatgtggacccgcag
gccgagtttttcgccgtggcccacctggccggcaccgccgccacgccccgcgccaccctg
gccgcgcccgtgagccgcgaagagctggaaaccgcttttgccgggcagattacgaccacc
gacgaggtgcgctacgatcccgccacccagcgcgtaaccggccggcgggtgcgccgcctg
ggggccctgcgcctggccgaaaccgttatcggccagcccgacgcggcgctggtggccggg
gccctgctggcgtatttgcaggaagccggcttgagcaaactgaactggacgcccggggcc
cggcagctccagcagcggctggagtttctgcggtaccagttccccgagcccgcggccgcc
ggtggagaagctttcaccacggcccaagcaccaagcaccaagcaccaagcaccaccctgg
cccgcctccgacgaggccacgctgctgcgcgagttgccgcagtggctggggccccacctg
gccggcttcaaaagcctcgaccaggtgcagcgcctggatttgaccgagccgctgttggcg
cgcctgcccggcggctgggcccagcgccaggccctggaccgccttgcgcccgccgccctg
gaggtgcccagcggctcgcacgtcactctcgactatgccgagcctaccgccccggtactg
gccgtgaagttgcaggagctgtttggcctgacagaaacgcccaccgtggccggcggccgc
gtaccgctgctgctgcatttgctctcgcccggcggccggccagcgcaggtcacgcgcgac
ttacgcagcttttgggagaagggctacttcgacgtgcgcaaggatttgaagggccgctac
ccgcgccacccctggcccgataagcccatggagcacatcccaactaagctgactaagagg
cggttggataacttatag
DBGET
integrated database retrieval system
