Hymenobacter nivis: DDQ68_12870
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Entry
DDQ68_12870 CDS
T05498
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DDQ68_12870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hnv03021
]
DDQ68_12870 (rpoC)
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_12870 (rpoC)
Enzymes [BR:
hnv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DDQ68_12870 (rpoC)
Transcription machinery [BR:
hnv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DDQ68_12870 (rpoC)
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DDQ68_12870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
BSH_RND
Apocytochr_F_C
RnfC_N
WHD_PKMT
Motif
Other DBs
NCBI-ProteinID:
AWM33598
UniProt:
A0A2Z3GK69
LinkDB
All DBs
Position
complement(2879841..2884193)
Genome browser
AA seq
1450 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPEVILERSTGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGAMAEEGVQQLDFMTEDEYLDVIDKLPRENQMLPN
EDPNKFIAKMGADALQMLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRVENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTDDENIQ
GEGRVFYSDEEVVIALNENKLSKHAYIKVRTIIRDENDDLVTKVIETVAGRVLFNQMVPA
EVGFVDELLTKKKLQQIISLVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDINIP
KEKDELIAQAQADVAAVTQNYQMGLITNNERYNQVIDIWTRINNQITETLMGRLEKEDQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTAMKTADAGYLTRRLHDVAQDVIVTQSDCGTLRGIETFALKDNEDI
VEPLSERILGRVAVHDIVDPLTDEMILIAGGEITEEITRRVDQTAIESVEIRSVLTCESK
RGICGKCYGRNLSSGRMVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEAGIK
AKFAGVVEFEDIRTVDTLNNEGVKGQVVMGRSGEIRVVEAGTGKVLLSNHVPYGSVLLVK
EGQQVEKGHELCTWDPYNAVILAEFDGTVQYDAITEGITYREESDEQTGHREKVVIESKD
KAQNPSIIVKGGKKADADAQRAYSLPVGSHINIANNAKIKAGDILAKIPRMVGKTRDITG
GLPRVVELFEARNPSNPAVVSEIDGVITYGSVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGMPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTSFLENQVINKILFMEENDTIIDMKVVTEAGDSASMKPGQIVTARR
LRDENSSLKRRDLQLVQVREAQPSVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLLEYTRQIVQTKDEVEAQQAAKAAEEATPAKRPS
RAGKRETVAE
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcaaaaaacaagaagttagtacaggacttctctaaagttaccatctcgctg
gcgtccccggaagtaattctggagcgctcgactggagaggtggtgaagcctgaaaccatc
aactaccgcacttacaagcccgagatgggcggcctgttttgcgagcgaattttcggccct
gtgaaggactgggaatgccactgcggcaagtacaagcgcattcgctacaaaggcatcatc
tgcgaccggtgcggcgtggaagttaccgagaagaaagttcgccgtgagcggatgggtcac
atcgagttggtggtgcccgttgcgcacatctggtacttcaagtcgttgcctaacaaaatc
ggctacctgctgggcttgcccactaagaagctcgaccagattatctactacgagcgctac
gtagtggtgcagcccggtgcaatggctgaagaaggcgtgcagcaactcgactttatgacg
gaggacgagtacctggacgtcatcgacaagctgccccgtgaaaaccagatgctgccgaac
gaagaccccaataaattcatcgctaagatgggggccgacgctttgcagatgctgttggag
cgcattaacctcgacgagctgagctactcgctccgcgactcggctgcgcacgaaacctcg
cagcagcgtaaagctgaagcattgaagcgcctgcgcgtggtggaagcgttccgtgacgcc
gctacccgtgtggagaacaagcccgagtggatggtaatccgcatggtgccggtgattccg
cccgagctgcgcccactggtgccgcttgacggtggtcgcttcgccacgtcggacttgaac
gacctgtaccgtcgcgtcatcatccgcaacaatcgcctcaagcgcctgattgaaatcaag
gccccggaggtgattttacggaatgagaagcggatgctgcaagaagctgtcgattcgctc
ttcgataactcgcgtaaggtaaacgccgtgcgtgccgaaggcaaccgggccctgaagtcg
ctgtctgatatgctgaaaggtaagcagggccgcttccgtcagaacctgcttggtaagcgt
gttgactactcgggccgttcggttatcgtagtgggccccgagctgaaactgcacgagtgt
ggcttgcctaaaaatatggctgccgagctgttcaagccattcatcatccgcaagctcatc
gagcgcggtatcgtgaaaacggtgaaatcggctaagaaaatcgtggaccgcaaagacgcc
gttgtttgggacatcctggagaacgtgctgaaaggccaccccgtgctgctcaaccgggcc
cccacgttgcaccgcttgggcatccaggcgttccagccgcgcctcatcgagggcaaagcc
atccagctgcacccgctggtgtgtacagctttcaacgccgactttgatggtgaccagatg
gctgtgcacgtgcctctgggcccagctgccatcctggaagcttccatgctgatgttggct
tcgcacaatatcctgaaccctgccaacggggcccccatcgcggtgccttcgcaggatatg
gtgcttgggctgtattatgtgaccaaaggcaagcgcagcacagacgatgagaacatccaa
ggcgaaggccgggtattctattcagacgaggaggttgtaattgctctaaatgaaaataag
ctttcgaagcacgcttacatcaaggtgcgcacgatcatccgcgatgagaacgacgatttg
gtgacgaaagtcattgaaacggtggcaggtcgtgtactgttcaaccagatggtgcccgct
gaagtgggcttcgtggatgagctgttgactaagaagaagcttcagcagattatttcgctg
gtgtttaagcgcacgggcatggcccgcacggcgcaattcctggacgacatcaaaacgctc
ggtttccagtcggcttacaaaggcggcttgagcatgggccttggtgacatcaacattccc
aaggagaaagacgagttgattgcgcaagcccaggctgacgtagctgcggtgacgcaaaac
taccagatgggtctgattactaataacgagcgttacaaccaagttattgacatctggacg
cgcattaacaaccagattacggaaaccctgatgggccgcctggagaaggaagaccaaggc
ttcaactccatctacatgatgatgcactcgggggcccgtggttcgcgcgagcagattcga
cagctcggcggaatgcgtggcctgatggccaagccccaaaagtcgctgcaaggctcagta
ggtgaaattatcgagaacccgattctgtctaacttcaaagaaggcctggacgtaattgag
tacttcatctcgacgcacggtgcccgtaagggccttgctgatacggctatgaagacggct
gacgccggctacctgacccgtcgtctgcacgacgtagcccaggatgtaatcgtaacccaa
agcgactgcggtaccctgcggggcatcgaaacttttgcattgaaggacaacgaggatatt
gtggagccgctgtccgagcgtatcctcggccgagtagccgtccacgacatcgtggacccg
ctgaccgatgagatgatcctgattgccggcggtgagattaccgaggaaattacccgtcgt
gtcgaccaaacggccattgagtcggtggagattcgttcggtattgacttgtgagtcgaag
cgtggcatctgcggtaagtgctatggccgtaacctgtcgtcgggccgcatggtccagcgc
ggtgaggcagtgggcgttatcgctgctcagtctattggtgagcccggtacccagcttacg
ctgcgcacgttccacgtgggtggtaccgcttcaaacattgccgtagaggccggcatcaag
gcgaaattcgctggcgtggttgagtttgaagatatccgcaccgtggataccctgaataac
gaaggcgtcaaaggccaagtagttatgggccgctcgggcgaaatccgagtagtagaagca
ggtactggcaaagtgctgctatctaaccatgttccctatggctcggtcttgctggtgaag
gaaggtcagcaggtagagaaaggccatgaactttgcacttgggacccctacaacgccgtt
attctggccgagtttgacggtacggtgcagtacgacgccatcacggaaggcattacctac
cgcgaagagtcggacgagcaaacgggtcaccgcgagaaggtagtcatcgaaagcaaagac
aaggctcagaacccgtccatcattgtgaagggcggcaaaaaggccgatgccgatgctcag
cgggcttacagcctgcccgttggttcacacattaacattgcgaacaacgcgaaaatcaag
gctggtgatatcctggccaagattccgcgcatggtgggcaaaacccgtgacatcaccggt
ggtctgccgcgtgtagtggaactgttcgaagctcgtaacccgtcgaacccggccgttgtg
tcggaaatcgatggcgtgataacctacggttcggtgaagcgtggtaaccgtgaaatcttc
gtcgagtcgaaagacggtgtaaagaagaagtacatggtgccgctgtcgaagcatattttg
gtgcaggacaacgacttcatccgcgccggcatgccgctatcggacggtgccattacacct
tccgatatcctgagcattcagggccccggggccgtgcaagagtatctcgtgaatgagatt
caggaagtataccgcttgcagggtgtgaagattaacgacaaacatattgaagtggtcgtc
cgccaaatgatgcagaaagtggtgatcttggatgctggcgatacctcgttcctcgagaac
caggtgattaacaaaatcctgttcatggaggaaaatgacaccatcatcgatatgaaggtg
gtgacggaagccggtgactcggcatctatgaagcctggtcagattgtgacggctcgccgc
ctccgcgacgagaacagcagcctgaagcgccgcgatctgcaactcgtgcaagtgcgcgag
gcgcaaccttcggtgtcacgccccacgctgcaaggaatcacgcaagcctccttgggcacg
cagtcgttcatctcggctgcctcgttccaggagacaaccaaggtgctgtcggaagccgct
atccgtggcaaagccgatgagctgttgggtctgaaggagaacgtgattgtcggtcacctc
atcccggccggtaccggtttgttagaatacacgcgtcagatagtgcaaactaaagacgaa
gtggaagcccagcaggctgctaaagctgccgaggaagctacgcctgccaagcgcccctcg
cgcgctggcaagcgggaaaccgtagccgaataa
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integrated database retrieval system
