Hymenobacter nivis: DDQ68_15500
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Entry
DDQ68_15500 CDS
T05498
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03410
Base excision repair
hnv03430
Mismatch repair
hnv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DDQ68_15500 (recJ)
03430 Mismatch repair
DDQ68_15500 (recJ)
03440 Homologous recombination
DDQ68_15500 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hnv03400
]
DDQ68_15500 (recJ)
DNA repair and recombination proteins [BR:
hnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DDQ68_15500 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DDQ68_15500 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DDQ68_15500 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AWM34067
UniProt:
A0A2Z3GQS5
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All DBs
Position
3502216..3503955
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AA seq
579 aa
AA seq
DB search
MPPPAAKSWNFAPAPDPALVLAITEALPVGPEVGALLVQRGLDTPEAAAAFIYSDLRQLP
DPFLLRDMDLAVDRLVRALETGEKVLVLGDYDVDGITSVALVISYLTPLFGAERLRDYIP
DRYTEGYGISHTAVDVAAAEGFGLIVALDCGIKALEPVAYAAAKGVDFIICDHHLPGDEL
PAAVAVLDPKRKDCCYPYKDLSGCGVGFKLMQGLGQRLGRDTAFLYDLLDLVTVSIAADV
VPVTGENRVLAAHGLRCFNEDAHLLRPGLAALRELATLREGPLTLSSLVFGFAPRINAAG
RMGDARRAVAMLLAADQQEARHTTEVVDRMNQERRGSDQATTQEALALIAASPTLQTSHA
TVLYQAHWHQGVLGIVASRCLDQYYRPTVILTQRDGKATGSARSVAGFDIHAALEACAPL
LEQYGGHRAAAGLTLKVENVPAFQAQFEEVVARTQATAHLVRPVEIDALLPVARITEGFL
QDLRPLEPFGPGNPNPVFATARVLAVPGSAREVGNGHLKIRLVAADAPGPAVEVIGFGLA
GYLPQINEGHPFDVCYTLEMNEYRGSRHVQLRLLDLRWA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgccaccacccgccgccaaaagctggaactttgcgccggctcccgacccggcgctggtt
ctggccattaccgaggccctgcccgtagggcccgaagtaggggccctgctcgtgcagcgc
ggcctcgatacccccgaagccgccgccgcgttcatctactctgacctgcgccagctgccc
gacccgttcctgctgcgcgacatggacctggccgtggaccgcctcgtgcgggccctggaa
acgggcgaaaaagtgctcgtgctgggcgactacgacgtggacggtatcacgtcggtggcg
ctggtcatcagctacctcacgcctctgtttggggccgagcggctgcgcgactacatcccc
gaccgctacaccgagggctacggcatcagccataccgccgtggacgtggccgccgctgaa
ggcttcggcctgattgtggccctcgactgcggcatcaaggccctggagccggtggcctac
gccgcggccaagggcgtcgatttcatcatttgtgaccaccacttgcctggcgacgagctg
cccgccgccgtggccgtgctcgaccccaagcgcaaagactgctgctacccctacaaggat
ttgtcgggctgcggcgtgggcttcaagctgatgcagggcctgggccagcgcctgggccgc
gacacagcgtttctctacgacctgctagacctggtgacggtgagcattgccgccgacgtg
gtgcctgtaacgggtgaaaaccgcgtgctggccgcccacggcctgcgctgcttcaacgaa
gatgcgcacttgctgcgccccggcctggccgccctgcgcgagctagccaccctgcgcgag
gggcccctgacgctcagtagcttagtattcggctttgcgccgcgcatcaacgccgccggg
cgcatgggcgacgcccgccgcgctgtggccatgctgctggccgccgaccagcaggaggcc
cgccacaccaccgaagtggtggaccgcatgaaccaagagcgccgcggctccgaccaggcc
accacccaggaggccctggccctgattgccgccagccccactttgcaaacatcccacgcc
acggtgctttaccaggcccactggcaccagggcgtgctgggcatcgtggcctcgcgctgc
ctcgaccaatactaccgccccacggtcatcctcacgcagcgcgatggcaaggccacgggc
tcggcgcgctcggtggcggggttcgacatccacgcggccctggaggcctgcgccccgctg
ctggagcagtacggcggccaccgcgccgccgccggcctcaccctgaaggtcgaaaacgtg
cccgccttccaggcgcaattcgaggaggtggtggcccgcacccaggccacggcccacctg
gtgcggcccgtcgagattgatgccctgctgccggtggcccgcatcaccgaaggcttctta
caggatttgcggcccctggagcctttcgggcccggcaaccccaacccggtgtttgccacg
gcccgcgtgctggccgtgcccggcagcgcccgcgaagtgggcaacggccacctcaaaatt
cgtctcgtggccgccgacgcccccggccccgccgtggaagtcatcggcttcggcctggcc
ggctacttgccccaaatcaacgaaggccaccccttcgatgtgtgctacacgctggaaatg
aacgagtaccgcggcagccgccacgtgcagctgcggctgctggatttgcgctgggcgtag
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