Hymenobacter nivis: DDQ68_17175
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Entry
DDQ68_17175 CDS
T05498
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
hnv
Hymenobacter nivis
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hnv03009
]
DDQ68_17175 (rimO)
Enzymes [BR:
hnv01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
DDQ68_17175 (rimO)
Ribosome biogenesis [BR:
hnv03009
]
Prokaryotic type
ribosomal protein modification factors
DDQ68_17175 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
AWM34364
UniProt:
A0A2Z3GY88
LinkDB
All DBs
Position
complement(3871829..3873142)
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AA seq
437 aa
AA seq
DB search
MKVRNQNQNKVNVITLGCSKNIVDSEVLMGQLQANDFDVTHEATKSDANIVIINTCGFID
NAKQESIDTILRYADEKEAGRLEKLYVTGCLSQRYKDELEVEIPQVDAYFGTLELPQLLK
VLNADYKHELVGERLLTTPRHYAYFKIAEGCNRPCSFCAIPLMRGKHVDRTMDDLVRDAS
RLAAQGTKELILIAQDLTYYGLQAYGERKLPELLRRLSDVNGIEWIRMQYAYPSQFPLEA
LDVMAERANICKYLDMPLQHGSDNMLKIMRRGITRRRTSELVDTIRQRVPGIALRTTLIA
GHPGETEADFEEMYEFVRQTRFERLGIFTYSHEDNTHAYTLEDSVPANLKQERADAIMEL
QQGISLELNEARVGQTYKVLFDRKESGHFVGRTEFDSPEVDNEVLVPVEKDTFVRLGDFA
NVKITSATDFDLYGTLV
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagttagaaatcaaaaccagaacaaggtcaacgtcatcacgctgggctgctcgaag
aacatcgtggacagcgaggtgctaatgggccagctccaggccaacgactttgacgtgacg
cacgaggcgacgaaaagcgacgccaacatcgtcatcatcaacacctgcggcttcatcgac
aatgccaagcaggaaagcatcgacaccatcctgcgctacgccgacgagaaagaagccggt
cgcctggagaagctgtacgtgacgggctgcctctcgcagcgctacaaggacgagctggag
gtagaaatcccgcaggtggacgcctatttcggcaccctggagctgccccagctgctgaag
gtgctgaacgccgactacaagcacgagctggtgggtgagcgcctgctgaccacgccgcgc
cactacgcctacttcaaaattgcggagggctgcaaccgcccctgctcgttttgcgccatc
ccgctgatgcgcggcaagcacgtggaccgcaccatggacgacctcgtgcgcgacgccagc
cgcctggccgcccagggcaccaaggagctgattctcattgcccaggacctgacctactac
ggcctgcaagcctacggcgagcgcaagctgcccgagctgctgcgccgcctgtccgacgtg
aacggcatcgagtggattcggatgcagtacgcctacccgtcgcagttcccgctggaggcg
ctggacgtgatggccgagcgcgccaacatctgcaagtacctcgacatgcccttgcagcac
ggctcggacaacatgctgaaaatcatgcgccgcggtatcacccgccgccgcacgtcggaa
ctggtcgataccatccggcagcgggtgccgggcattgcgctgcgcaccacgctcatcgcc
ggccaccccggcgaaacggaggccgactttgaggagatgtacgaatttgtgcgccagacg
cggttcgagcggctgggtattttcacgtattcgcacgaagacaacacgcacgcttacacg
ctggaagacagcgtacccgccaatcttaagcaagagcgcgccgacgccatcatggagctg
cagcagggcatttcgctggaactgaacgaggcccgcgtgggccagacatacaaggtactg
ttcgaccgcaaggaaagcgggcacttcgtgggccgcaccgagttcgactcgcccgaggta
gacaacgaggtattggtgccggtagagaaggatacattcgtgcgcctgggcgacttcgcg
aacgtgaaaatcacctccgccacggattttgacctctacggaacacttgtttaa
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