Hymenobacter nivis: DDQ68_18620
Help
Entry
DDQ68_18620 CDS
T05498
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hnv
Hymenobacter nivis
Pathway
hnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDQ68_18620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hnv03019
]
DDQ68_18620
Enzymes [BR:
hnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDQ68_18620
Messenger RNA biogenesis [BR:
hnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDQ68_18620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AWM34615
UniProt:
A0A2Z3GUD6
LinkDB
All DBs
Position
complement(4193203..4194612)
Genome browser
AA seq
469 aa
AA seq
DB search
MEPTAAPSFNDFKLNKQLLTAVAEAGFTEPTPVQAQTIPLLLAGHDLLGIAQTGTGKTAA
FGLPLLMKVKYAQGINPRALVLAPTRELAMQIETHLKALATQTDLRIFAIYGGLGPKTQI
ETIAQGVDILIATPGRLMEIYLKGALLLKDLKTLVLDEADKMMDMGFMPQIRRILEIIPR
KRQNILFSATMPERVTLLSEEFLEFPVRVEVTPPAQTASTVTQTLYEAPNLLTKINLLHF
LLHRDQEIMTRVLLFTRTKEHADQVAHFLERKAPAGEVRVIHGNKGQNARINNMDAFRAG
EVRYLVATDVAARGIDVPQVSHVINFDVPIIHDDYVHRIGRTGRALHTGAAITFANEAEM
VHIAEIEQLINQTIELLPLPEEVKVEETPFEEQQTMSRELDDRRKLLDPEFKGAFHERKE
WIKPGETIDKRTGKVFQAGKKKSSKGAKANPGKKGASAPGVKALKRRGR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggaacccactgctgccccgtcgttcaacgatttcaaactcaacaaacaattgcttacg
gccgtggccgaagccggcttcaccgagcccacgccggtgcaggcccaaaccattccgctg
ctgctggccgggcacgatttgctcggcattgcccagaccggcacgggcaaaacggccgcc
ttcggcctgcccctgctgatgaaggtgaagtacgcccagggcatcaacccgcgggccctg
gtgctggcccccacccgcgagctggccatgcaaattgaaacccacctcaaggcgctggcc
acccaaaccgacctgcgcattttcgccatttacggcggcctgggtcccaaaacgcagatt
gaaaccatcgcccagggcgtggacatcctgattgccacaccgggccggctgatggaaatt
tacctgaagggggccctgctgctgaaggacttgaagacgctggtgctcgacgaggccgac
aagatgatggacatgggcttcatgccccagatccggcgtattctggaaatcatcccgcgc
aagcgccagaacatcctattttcggccaccatgcccgagcgggtaacattactgagcgag
gagttcctggaattcccggtacgggtggaggtgacgccgccggcccaaacggcttcgacc
gtgacgcagacgctgtacgaagcccccaacctgctcaccaaaattaacctgctgcacttc
ctgctgcaccgcgaccaggaaatcatgacgcgcgtgctgctcttcacccgcaccaaggag
cacgccgaccaggtggcgcacttcctggagcgcaaggcccccgcgggcgaggtgcgcgta
atccacggcaacaagggccagaacgcgcgcatcaacaacatggacgcgtttcgggccggg
gaggtacgctacctagtggccaccgacgtggcggcccgcggcatcgacgtgccccaggtg
agccacgtcatcaacttcgatgtgcccatcatccacgacgactacgtgcaccgcatcggg
cgcacgggccgggccctgcacacgggcgcggccatcaccttcgccaacgaggccgagatg
gtgcacatcgccgagattgaacagctcatcaaccagaccatcgagctgctgccactgccc
gaagaagtgaaggtggaggaaactccgtttgaggagcagcaaaccatgagccgcgagctg
gacgaccgccgcaagctgctcgaccccgagtttaagggggcctttcacgagcgtaaggag
tggatcaagcccggcgaaaccatcgacaagcgcacgggcaaggtgttccaggcaggcaag
aagaaaagctccaaaggcgccaaggccaacccgggcaaaaagggtgcttcggcccccggc
gtcaaggccctgaagcggcgcgggcggtaa
DBGET
integrated database retrieval system
