Hoeflea alexandrii: ABWH89_03125
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Entry
ABWH89_03125 CDS
T11168
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hoax Hoeflea alexandrii
Brite
KEGG Orthology (KO) [BR:
hoax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hoax03400
]
ABWH89_03125 (addA)
Enzymes [BR:
hoax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWH89_03125 (addA)
DNA repair and recombination proteins [BR:
hoax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
ABWH89_03125 (addA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
XHC38333
LinkDB
All DBs
Position
complement(689492..693052)
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AA seq
1186 aa
AA seq
DB search
MTDDSGMTVISDTTLRQNLAATPTLSAWVSANAGSGKTHVLARRVIRLLLRGARPSAILC
LTYTKAASAEMSNRIFRTLGEWVRLDDARLAERIAELEGRAAEPHQLVRARRLFATALET
PGGLKIQTIHAFCEAVLHRFPLEANIPGHFSVLDDQKAAELLAEARRQLMSTQSFENDPD
LAAAVTEALDTGGEAGFDKLLQGLYARRRDYMAFDARARTPQAAEALIRAALGLLPQENE
ASLVETVWPLDVLPVDYIRAVFDFAGSAKSSTKAYNFTYGLLAVGSEPGAQKRLQLLRDV
FFTKSGSPASLGSVASKTVQERFPDLADRVAEAQAQVVAIFDRLARLRMLAASLTAFRLA
RRYLGEFERLKTRQALLDYDDLIGATEALLSKSGASAWVHYKLDQGIDHVLVDEAQDTAP
LQWNVIGALSDEFFAGEGARPATRTLFAVGDEKQSIYSFQGARPERFAEERSRIARLARA
ADTEFEQVSLRVSFRSSTEVLKLVDHVFADADALRGMGSADEPVIHETARMQAPGLVEVW
PMIAKEQSGNDEDWTAAFDEVPADAPAARLAERIADLLSRWVGHELIEDQKSKQMRPVAP
GDILVLVRKRDGFVPTLLRTLKATTDIPVAGADRLRLTDHIAVQDLMALGRFVLLGDDDL
SLAALFKSPLLNLGEDDLFAVIAERPDGMSVWQRLQEVAEAEPRFARAVEKLKRWKVRSA
HQPPHDFYAALLGPDGGRKAYLSRLGHEVGDVLDEFLGLTLDHEQAGLPGLQSFLAMLET
DTPEIKREMEGQSGAVRIMTVHAAKGLEAPIVFLVDSGGEAFQHSHQPRLWLLPPAPESE
EGPSIPVWLPDKTHENEATAPVREKMREQAEEEYRRLLYVGLTRAADRLVICGYRGLREV
KTPTWHSMASVGLERAVVEAGYTVSDGVHGAGDETFDVRRFSRIRPEPAIPGTATTPSGP
APAPANEAISIPSGPLPPPARLPRPLAPSGVSAVLEDSADVASRSPFADGQPGSAAALER
GSMIHRLLQVLPSVPDTERQAVLSRYLARALPEAEAATAETMQRQVLAVLQDPQFAPIFD
APGEAEVSVMGTLRVRGEERAVSGRIDRIALDGDRVLIIDYKTGLAPRPGEDPPAGHISQ
LAIYRALLAPLYPGRRIDAALVYVSAPVLVEIPASTLDQALAALDQ
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgacagcggcatgaccgtcatctctgacacgacgctgcgccagaatcttgcc
gcgacgccaacgctttcggcctgggtgtcggcaaatgccggttccggcaagacccatgtg
ctggcccgccgggtcattcggctgctgctgcgcggcgcgcgcccttcggcgatcctctgc
ctgacctacaccaaggccgcgtcggccgagatgtccaaccgcattttccgcactcttggt
gagtgggtccggctcgacgatgccaggctggctgagaggattgccgagcttgaggggcgt
gcagccgagccgcaccaactggtgcgcgcccgccggctgttcgccacggcgctcgaaacg
ccgggcggtctcaagatccagaccattcacgccttctgcgaggccgttctgcaccggttt
ccgctcgaggccaacattcccggccatttcagcgtgcttgacgaccagaaggccgcggaa
ctgctggcagaagcgcggcgccagctgatgtcgacccagtcattcgagaacgacccggat
ctggcggccgctgttaccgaagcgctcgacaccggcggcgaggctggcttcgacaagttg
cttcaaggcctctatgcccgccgccgcgactacatggccttcgacgccagggcgcggaca
ccgcaagcggcggaagccctgatccgggcggccttggggctattaccgcaggaaaacgag
gcttcgctcgtcgagaccgtctggccgctcgatgtcctgccggtcgattacatccgggcg
gtcttcgatttcgccggatcggccaaatcatcgaccaaagcctataatttcacctacgga
ttgctggccgtcgggtccgaacccggggcgcagaaacggctgcagctgctcagggacgtg
ttcttcaccaaatccggatcgccggccagcctcggcagcgtcgcctcgaagacggtccag
gagcgctttcccgaccttgccgaccgcgtcgccgaggcccaggcccaggtggtcgccatt
ttcgacaggctggcgcggctcaggatgctggcggcctctttgaccgccttccgtctggcg
cggcgctatctcggcgagttcgaacggctgaaaacccgccaggccctgctcgattatgac
gacctgatcggcgcgacggaggcgctcttgtcaaaaagcggcgccagcgcctgggtccac
tacaagctcgaccagggtattgaccatgttttggtcgacgaggcgcaggacaccgcaccg
ctgcaatggaacgtcatcggcgcactctccgatgagttctttgctggcgaaggagcccgc
ccagccacccgcacgctgtttgcggtcggcgacgagaaacagtcgatctattcgttccag
ggcgcccggcccgagcggtttgccgaagaacgcagccgcattgcacggcttgcacgggcg
gcggacactgagttcgaacaggtatcgttgcgagtgtccttccgctcctccaccgaggtg
ctcaagctcgtcgaccatgtctttgccgatgcggacgcgctgcgaggcatgggctccgcc
gatgagccggtgatccatgaaacggcgcggatgcaggcgccgggcctggtcgaggtctgg
ccgatgattgcgaaggagcagtcgggcaacgacgaggactggaccgccgcattcgacgag
gttcccgcagacgcacccgccgcccggctggcggagcgcatcgccgatctgctctcccgc
tgggtcgggcacgagctgatcgaggaccagaagtcgaaacagatgcggccggtggcgccg
ggtgacattctggtgctggtcaggaagcgcgacggtttcgtccccacgctgctgcgcacg
ctcaaggcaaccaccgatattcccgtagccggcgccgatcgtctgcgcctgaccgaccat
atcgcggttcaggacctgatggcgctcggccggttcgtgctgcttggcgatgacgatctc
tcgctggccgcgctgttcaagagcccgctgctgaatctcggcgaggatgacctgttcgca
gtgatcgccgagcggcctgacggaatgtccgtctggcagcggttgcaggaagtggcggag
gccgaaccgcgctttgcccgggcggtggagaaactcaagcggtggaaggtccggtcagcg
caccagccgccgcatgatttctatgcagccctgctcggtccggatggcggtcgcaaggcc
tatctctcccgtctcggccatgaagtcggcgatgtgcttgacgagtttctcggcctgacg
ctcgatcacgagcaggcgggccttcccggcctgcagtcgtttctcgccatgctcgaaacc
gacacgccggaaatcaagcgcgagatggaaggccagtccggcgcggtgcggatcatgacc
gtgcatgcggccaaggggctggaagctccgatcgtgttcctggtggattcgggcggcgaa
gccttccagcacagccatcagccccggctctggctgttgccgcctgcgcccgaaagtgag
gaagggccctcgatcccagtctggcttcccgacaagacccacgagaacgaggcgacagca
cctgtccgcgaaaagatgcgcgagcaggccgaagaagagtatcgtcgccttctctatgtc
gggttgacccgggctgccgaccggctggtaatctgcggctaccggggcctccgggaggtc
aagacgccgacctggcattcgatggcatcagtggggcttgaacgggccgtcgtcgaagcc
ggctacaccgtttccgacggggtgcatggagccggagacgaaactttcgatgtccgccgt
ttcagccgcatccgtcccgaacccgccatccccggcacggccaccacgccaagcggtccg
gcgccggcacctgccaacgaagcgatctcgattccctccggccccctgccgccgcctgcg
cgcctgccccggccactggccccgtccggtgtcagtgccgtgctcgaggacagcgcggat
gtggcatcccgctcgccctttgccgacggccagccgggatcggcagcggcgctcgaacgc
ggcagcatgatccaccgcctgctccaggttctgccttcggtcccagacacggagcgccag
gcggtgctttcgcgctacctcgcgcgcgccttgccggaagccgaggcagcaacggccgag
accatgcagcgccaggtgcttgccgttctgcaggatccgcaattcgcgccgatcttcgat
gcgcctggtgaggccgaggtctcggtcatgggcaccttgcgggtcaggggtgaggagcgc
gccgtatcggggcgcatagaccgcattgcgctcgatggtgaccgtgttctgatcatcgac
tacaagaccgggctggcgccgaggcctggcgaagatcccccggccggccatatctcccag
ctcgccatctatcgcgccttgctggcaccactctacccggggcggcgaatcgacgctgcg
ctggtctatgtttcggcgcccgtactggtcgaaatcccggcgtcgaccctggaccaggcg
cttgccgctctcgatcaatga
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