Parahoeflea alexandrii: ABWH89_08705
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Entry
ABWH89_08705 CDS
T11168
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hoax Parahoeflea alexandrii
Pathway
hoax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH89_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoax03019
]
ABWH89_08705
Enzymes [BR:
hoax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWH89_08705
Messenger RNA biogenesis [BR:
hoax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH89_08705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XHC39343
LinkDB
All DBs
Position
1854372..1855820
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AA seq
482 aa
AA seq
DB search
MLFSELGLSKALLDTLEGLHLTKPTPIQMQAIPLVLEGGDVIGLAQTGTGKTAAFSLPIL
HRLAPGKKAAPKKARALILAPTRELSAQIARSVKDYGRRLHLTSTVVVGGVSIRPQIKAL
ASGVDILIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPNTRQ
TLLFSATMPKEIRELSSRHLKNPKEVSVIPAKKTADRVEHTVMHIQTPQKMGALASLIRD
RKGERVIVFTRTKRGADKAAKRLEADGISAAAIHGNKSQGQRERALAGFRAGTVPVLIAT
DIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEK
MLKTEIPVEKAPEGTYVDALADPDGDFAPLNRTQRPRQGARPQGAAKPQGQGRKPGGRQG
QGQGGKPANGQQAGKPGANRHQPAAAANQNGDQPAAKSRRRRRSGDRRPRPEQGGNKAVA
QG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggcctctccaaggcccttctcgatacgcttgaaggtcttcac
ctgaccaagccgacaccaatccagatgcaggccatcccgcttgtgctcgagggcggcgac
gtcatcggcctggcgcagaccggcaccggcaagaccgcggcgttttcgctgccgatcctg
caccggttggcgcccggcaagaaggccgcgccgaagaaggcccgtgcgctgatcctggcg
ccgacccgcgaactctccgcccagatcgcccgcagcgtcaaggattacggccgcaggctg
cacctgacctcgactgtcgtggtcggcggcgtgtcgatccgtccgcagatcaaggcgctg
gcttccggtgtcgacattctgatcgccacccctggccggctgatggatctcatcgagcag
cgcgcggtgtcgctcaacgagatcgaagtcgttgtcctcgacgaggccgaccagatgctc
gacatcggcttcatgccggcgatcaagcgcatcctggcgatgacgccgaacacccggcag
acgcttctgttttcggcaaccatgcccaaggaaatccgcgaactgtcctcgcgccacctg
aagaacccgaaggaagtgtcggtgatcccggcgaagaagaccgccgaccgggtcgagcat
accgtcatgcacatccagacgccccagaagatgggcgcgctcgcatcgctgatccgcgat
cgcaagggcgaacgggtgatcgtgttcacgcgcaccaagcgcggcgccgacaaggccgcc
aagcggcttgaagccgacggcatctcggctgcagccattcacggcaacaagtcgcagggc
cagcgcgagcgtgcgcttgcaggcttccgcgccggcaccgtgccggtgctgatcgccacc
gacattgccgcccgcggcatcgacgtgccgggcgtcagcctggtggtcaattacgaactg
ccaaatgttccggaagtctacgtccaccgcatcggccgcaccgcgcgtgccggcgccgaa
ggcactgccgtgaccttctgtgcaccggacgaacgttcgctgctgcgcgatatcgaaaag
atgctgaagaccgagatcccggtcgaaaaggcgccggaaggcacctatgtcgacgcattg
gccgatccggatggggattttgccccgctcaaccgcacccagcgtccgcgccagggtgca
cggccacagggcgccgccaagccgcagggccagggccgcaagccgggtgggcggcaaggc
cagggtcagggcggaaagcctgccaatggtcagcaggccggcaagccgggcgccaaccgg
catcagcctgccgcagcagccaaccagaacggcgaccagccggcagccaagtcgcgccgc
cgccgtcgcagcggtgaccgtcgtccgcgccccgagcagggtggcaacaaggccgtcgcg
cagggctga
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