Hoeflea alexandrii: ABWH89_17115
Help
Entry
ABWH89_17115 CDS
T11168
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hoax Hoeflea alexandrii
Pathway
hoax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH89_17115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoax03019
]
ABWH89_17115 (rnr)
03016 Transfer RNA biogenesis [BR:
hoax03016
]
ABWH89_17115 (rnr)
Enzymes [BR:
hoax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABWH89_17115 (rnr)
Messenger RNA biogenesis [BR:
hoax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWH89_17115 (rnr)
Transfer RNA biogenesis [BR:
hoax03016
]
Prokaryotic type
tRNA degradation factors
ABWH89_17115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_IclR
HTH_24
MarR_2
HTH_Crp_2
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
XHC36637
LinkDB
All DBs
Position
3587248..3589626
Genome browser
AA seq
792 aa
AA seq
DB search
MGHPPRKSGSDKSKTGKPTPRTGDGENADTRPAFRRGDMPDREAILRFLSENPDRASKRD
IAKAFGLKGDTRTELKDLLRELEDEGLIERDRKMLRRPGTLPAVAVLEITMRDSDGDLIA
RPAEWLEDHGAAPKVTVRQSNAGRERGKSRSPSIAASIGDKVLARIFAAPHGKGMSYTAR
IMKILDRRDGLILGVYRSAPGGGGRLMPIERRGEEYAIDPDFTGDAKDGDLVEVETAKLG
RMGLPRAKVHAVLGSVEGEKAISMIAIHSHGIPHVFPAEVTAAAENAKPAPLSGGREDWR
HIPLVTIDPHDAKDHDDAVYAEEDPSPDNPGGVIVTVAIADVSWYVRPGSALDREALKRG
NSAYFPDRVVPMLPERISNDLCSLREGEDRPALALRMVFSAEGRKVGHRFHRVMIKSAAK
LSYQQAQAAMDGNPDDKSGPLLEPVLKPLWNAYRVLKRERDRRQPLDLDMPERKILLTPE
GKVDKVIVPERLDAHRLIEEFMIQSNVAAAETLEKRRQPLIYRVHDQPSLAKQEVLREFL
GTLNLSLARGAAIRANAFNGILAKARGEPYQDMVNEMVLRSQSQAIYSPENMGHFGLNLM
KYAHFTSPIRRYADLIVHRALVGSLGLGEGGITPAEEAALENIAAEISTTERRAMAAERD
TVDRLVAHHLAGRLGEAFEGRVSGVTKSGLFVSLPQFGADGFIPVSTLGLDYYHYDEAHQ
ALTGEKTGLGYRLGDGVEVKLVEVIPLAGSMRFEMLSEGQKMPKGTRSFHKSGRARRGTP
KKPGTRPPRGRR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
ttgggacaccctccccgtaaatcaggctccgacaaatccaagaccggcaaaccgaccccc
cgaacgggcgatggtgagaacgcggacacgcgcccggccttccgtcgtggcgacatgccg
gaccgggaagcgatcctgcgttttctcagcgaaaaccccgaccgcgcgtccaagcgcgac
attgccaaggcgttcggattgaagggcgacactcggaccgagttgaaagaccttcttcgg
gagctcgaggatgaaggcctgatcgagcgggaccggaagatgctgcggcggcccggcacc
ctgcccgcagtcgccgtgctcgaaatcaccatgcgcgacagcgacggcgacctgattgcc
cgtccggcggagtggctcgaggatcacggtgccgcccccaaggtgactgtgcgccagtcc
aatgccggacgagagcgcggcaagtcccgctcaccgtctattgccgcgagcatcggcgac
aaggtgctggcgcggatctttgccgctccgcacggcaagggcatgagctacaccgcgcgg
atcatgaagatcctcgatcggcgcgacgggctgatcctgggcgtctaccgctcggcaccg
ggcggcggcgggcggctgatgccgatcgagcggcgcggcgaggagtatgccatcgatccg
gacttcaccggagacgcgaaggatggcgacctggtcgaggtggaaaccgcgaaactcggg
cgcatgggtcttccccgcgccaaggtgcacgcggtgctgggttcggtggaaggcgaaaag
gcgatctcgatgatcgccatccattcgcacggcattccgcacgtcttcccggccgaggtg
actgccgcagcagaaaacgcgaaaccagcgcccctttccggcggtcgcgaggactggcgg
catatcccgctggtgaccatcgatccgcatgacgccaaggaccatgatgacgcagtttat
gcggaagaagacccctcacccgacaatccgggcggtgtgatcgtcaccgtggcgattgcc
gatgtctcctggtatgtgcggcccggttcggcactcgaccgagaggcgctcaagcgtggc
aactcggcctatttccccgatcgcgtggtgccgatgctgcccgagcggatttccaacgat
ctgtgttcgctgcgcgagggcgaggaccggccggcgctggcactgcgcatggtgttttcc
gccgaaggccgaaaagtcgggcaccgcttccaccgcgtgatgatcaagagcgcggccaag
ctgtcctaccagcaggcgcaggcagcgatggacggcaatccggacgacaagtccggcccg
ctcctggaacctgtcctgaagccgctctggaacgcctaccgggtgctcaagcgcgaacgg
gaccggcgccagccgcttgatctggacatgccggaacgcaagatccttctcaccccggaa
ggcaaggtggacaaggtgatcgtgcccgagcggcttgacgcgcaccggctcatcgaagaa
ttcatgatccagtcgaacgtcgccgccgcggaaacgctggagaagcgccggcagccgctg
atctaccgggtgcatgatcaaccgtcgctggccaagcaggaggtgctgcgcgaattcctg
ggcacgctcaatctgtctctggcgcgcggcgcagcaatccgggccaacgccttcaacggc
atcctggccaaggcgcgcggcgaaccctaccaggacatggtcaacgagatggtcctgcgc
agccagagccaggcgatttactcgcctgaaaacatggggcatttcggcctcaacctgatg
aagtacgcgcacttcacctcgccgatccggcggtatgcggatctgatcgtgcaccgcgcg
ctggtcgggtcgctggggctgggcgaaggcggcatcacgccggccgaagaggccgcgctc
gaaaacattgccgcggagatatcgaccaccgaacggagggcaatggccgccgagcgcgat
accgtcgaccggctcgtcgcgcaccatctggcgggccgcctcggcgaggcctttgagggc
cgtgtttcgggcgtgaccaagtccgggctcttcgtcagcctgccgcaatttggcgcagac
ggatttattccggtttcaactttgggattggactattatcactatgacgaggcacaccag
gcactgactggggagaagaccggcctggggtatcgtctgggcgatggagtggaggtcaag
ctggtcgaagtgatcccgctggcaggctcaatgcgttttgagatgctgagcgaagggcag
aaaatgcccaagggcacacgatcgtttcacaaatcaggccgtgcccgccggggaacccca
aagaagcccgggacacggccacctcgcggacggcgctga
DBGET
integrated database retrieval system
