Hemiscyllium ocellatum (epaulette shark): 132812477
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Entry
132812477 CDS
T09720
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132812477 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hoc03019
]
132812477 (mtrex)
03041 Spliceosome [BR:
hoc03041
]
132812477 (mtrex)
03009 Ribosome biogenesis [BR:
hoc03009
]
132812477 (mtrex)
03016 Transfer RNA biogenesis [BR:
hoc03016
]
132812477 (mtrex)
Enzymes [BR:
hoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132812477 (mtrex)
Messenger RNA biogenesis [BR:
hoc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
132812477 (mtrex)
Spliceosome [BR:
hoc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132812477 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
132812477 (mtrex)
Ribosome biogenesis [BR:
hoc03009
]
Eukaryotic type
Pre-60S particles
Helicases
132812477 (mtrex)
Transfer RNA biogenesis [BR:
hoc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
132812477 (mtrex)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132812477
NCBI-ProteinID:
XP_060678946
LinkDB
All DBs
Position
1:76489368..76628487
Genome browser
AA seq
1033 aa
AA seq
DB search
MADAFGDDLFSVFEEESSKKDKTGSGGTGGGGTLGKAFAGGAQGANAVSSVKNKREVETD
NPDDAFFGKKPKLEVVSTEEINLADLMPKVKVEQVDTVEGCNHEVAIPLSDEYQQLKPRT
GKAAKEYPFILDAFQREAIACIDNNQSVLVSAHTSAGKTVCAEYAIALALRDKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGELSKGDPKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMSKLDFNTDDEKKLVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGI
NMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNYKAIPGVVEKVKILE
GQYNEIEIPNEENVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNDDDDF
GWGVVINFNKKSNVKPNTGELDPLYVVEVLLLCNKDSVKLAASGAAKPAKPGEKGEMQVV
PILLHLITAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQG
LKKVIQKIEAFEHRMYSHSMHNDSNLETVYRLCERKAQIAGEIKAAKRELKKARTVLQMD
ELKCRKRVIRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGIFNDLAAEQATALL
SCFVFQEKANEMPKLTEQLAGPLRQMQECARRIAKVSAEAKLEVDEEMYLDSFRPHLMDV
VFTWANGATFAQICKMTEVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggatgatttgttcagcgtgttcgaggaggaatcctccaaaaag
gataaaacagggtctggaggcaccggcggcgggggcactcttgggaaggcctttgctgga
ggtgctcaaggagctaatgcagtttcctcagtgaagaacaagcgtgaagtcgagacagat
aatccagatgatgcattctttggaaaaaaaccaaaacttgaagttgtgtccaccgaggaa
attaatcttgcagacctgatgcctaaggtgaaggtggaacaagttgatacagtcgaaggc
tgtaaccatgaagtggccattccattgtcagatgaatatcagcaactaaaacctcgtact
ggaaaagcagccaaggaatacccttttattcttgatgcttttcaaagagaggccattgct
tgcattgataacaatcagtctgtactggtgtctgcacatacatcagctggaaaaactgtg
tgcgctgaatatgcaatagcgcttgctttacgtgataagcaaagagttatctttaccagt
cctatcaaagcattgagtaatcaaaaatatcgtgaaatgtatgaagaattccaggatgtt
ggactaatgactggcgatgtcacaatcaatccaacagcctcctgtctggtcatgacaact
gagattttgagaagcatgttgtacaggggatctgaggtaatgagagaagtcgcctgggtt
atctttgatgaaattcattacatgagagatgcagaacgtggtgttgtttgggaggaaaca
attattcttctcccagacaatgtacattatgtgttcctttctgcaactattcccaatgca
cgacaatttgctgaatggatctgccaccttcacaagcagccatgccatgtgatctatacc
gactacagaccgacacctttgcagcactacatttttccagctggaggtgatggattgcat
ctagtagttgatgaaaatggggattttagagaagataacttcaatactgctatgcaagta
ctgagagatgctggtgaactttccaagggtgatccaaagggacgtaaaggaggaactaaa
ggaccatcaaatgtattcaaaattgtgaaaatgatcatggaaaggaattttcagcctgtt
atcatcttcagcttcagcaagaaagactgtgaagcgtacgcacttcaaatgtccaagttg
gattttaatacagatgatgaaaaaaaactcgtggaagaggtatttaacaatgctattgat
tgcttgtctgatgaagataaaaaacttcctcaggttgaacatgtgctgcctcttttaaaa
cgaggaattggaatccaccatggtggtttgcttcctattttgaaagaaactattgaaatt
ctcttctctgaaggactcctgaaggcattatttgcaacagagacctttgctatgggtatc
aacatgccagcaaggacagttttgttcaccagtgcccgcaaatttgatgggaaagatttc
cgttggatctcttcaggggaatacattcaaatgtcaggtcgagctggtaggcgtggcatg
gatgaaagaggaatcgttattcttatggtagatgaaaagatgagtccaacagttggaaaa
caacttctgaagggctcagccgatcctcttaatagcgcatttcatctgacctataacatg
gttttaaacctccttcgtgttgaagaaataaatcctgagtacatgttggaaaaatccttc
taccagtttcagaattacaaagcaatcccaggagtggtagaaaaagtcaagatattggaa
ggccaatacaatgaaattgaaattcccaatgaagaaaatgtcgttacttactacaaaata
aggcagcagctggctaaactgggtaaagaaattgaggagtatatacacaaaccaaaatac
tgcttgccatttctacaaccaggcagacttgttaaggtgaaaaatgatgacgatgacttt
ggttggggagttgtcataaatttcaataagaaatctaatgtgaagcctaacactggagaa
ctggaccccttatatgtggtggaggttttattgctttgcaataaagacagcgtaaaactt
gcagcatcaggagcagctaaaccagctaaaccaggggagaaaggagagatgcaggttgtt
cccatcctgcttcatttaattacagccattagtagtgtacgtctctatattccaaaagat
ctgagaccactagacaacaggcaaagtgttttgaaatcaatacaggaagtacaaaagaga
tttcctgatggtgtacctttacttgatccaattgatgacatgggaatcaaggatcaagga
ctgaagaaagtaatacagaaaattgaggcttttgagcacagaatgtattcacattccatg
cataatgactcaaatttggaaactgtttacagactttgtgagaggaaagcacagattgct
ggagaaatcaaagcagcaaagcgagagctgaagaaagctcgaacagtattgcagatggat
gaactgaaatgccgtaaacgagtgatcagacgattaggctttgctacttcttctgatgta
attgaaatgaaaggacgagttgcttgtgaaataagcagtgcggatgaactactactgaca
gaaatgatgtttaatgggatcttcaatgatctggcagctgagcaggctacagccttactg
agttgctttgtatttcaggagaaggcaaacgaaatgcccaaactgacagaacaactagca
ggtccattacgacagatgcaggaatgtgccagaagaatagccaaagtttcagcagaagct
aaactggaggttgatgaggaaatgtacctcgactcatttcgcccccatttaatggatgtt
gtgttcacgtgggcaaatggagctacttttgctcagatctgcaaaatgacagaggttttt
gaaggcagtataattcgttgtatgagacgattggaagaactccttcggcagatgtgtcaa
gcagcaaaggcaataggaaacacagaactggaaaataaatttgcagaaggaattaccaag
atcaaaagagatattgtatttgctgcaagtctttacctgtaa
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integrated database retrieval system
