Hemiscyllium ocellatum (epaulette shark): 132814271
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Entry
132814271 CDS
T09720
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03040
Spliceosome
hoc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132814271 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132814271 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hoc03041
]
132814271 (prpf19)
04121 Ubiquitin system [BR:
hoc04121
]
132814271 (prpf19)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132814271 (prpf19)
Enzymes [BR:
hoc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132814271 (prpf19)
Spliceosome [BR:
hoc03041
]
Complex B
Other components
Prp19 complex
132814271 (prpf19)
Complex C
Prp19-CDC5 complex
132814271 (prpf19)
Ubiquitin system [BR:
hoc04121
]
Ubiquitin ligases (E3)
U-box type E3
132814271 (prpf19)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
132814271 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WDR55
Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR41
Beta-prop_Vps41
WDR90_beta-prop_4th
NBCH_WD40
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_SPT8
U-box
eIF2A
Beta-prop_Nup120_160
PROPPIN
Beta-prop_DCAF12
Beta-prop_ACSF4
Ge1_WD40
Beta-prop_VPS8
Tricorn_2nd
Beta-prop_WDR35_TULP_N
zf-Nse
RMC1_N
Cytochrom_D1
ATG16
DUF1830
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
132814271
NCBI-ProteinID:
XP_060679440
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MSLLCWISNEVPEHPCVSPVSNHVFERRLIEKYIVENGTDPINGQPLSEDQLIDIKASHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLAVPQAAPVTPAAAPGAGEPMDVGEQVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVRGEDLSKYRQVASHVGLHSASVPGILALDLCPSDTAKVLTG
GADKNVVVFDKNSEQILATLKGHGRKVTNVVYHPSENIVFSASPDTTIRIWSVSSASCVQ
VVRAHEGSVTGLSLHATGDYLLSASDDQYWAFSDIRTGRVLTKVTDEAAGCALTCAQFHP
DGLIFGTGTIDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSQVKLWD
LRKLKNFKTIQLDDHYEVKCLTFDQSGTYLAVAGTDIRVYVCKQWAEVLHFTEHSAQTTG
VAFGEHSRFLASSSMDRSLKLYSQ
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgctttgctggatttcgaacgaggtgccggaacatccgtgcgtgtctccggtc
tccaaccacgtgttcgagcggcggctgatcgagaagtacattgtggagaatggaaccgat
cccatcaacgggcagcccctgtctgaggaccaactcatcgacatcaaagcgagccacccc
atcagaccgaagcctccgtcagcgaccagcatcccagcaatcctcaaagctctgcaggac
gagtgggatgccgtgatgttgcacagcttcactctccgacagcagctgcagaccacccgc
caggagctatctcatgccctataccaacacgatgctgcctgcagagtcatagcacgtctc
accaaggaggtgaccgcagctcgagaagctctggccacgctgaagccccaggctggtttg
gccgtgccccaagcagcaccagttactcctgctgcagctcctggtgctggggagccgatg
gacgtgggcgaacaggtcggaatgacgccggagatcatacagaagctccaagacaaggcc
acggtgctgacgacggagcgtaagaagagaggcaagaccgtccccgaggagctggtgaga
ggcgaagatctcagcaagtaccgccaggtggcttcccacgtgggtctgcacagcgccagc
gtcccgggcatcctggccctcgacctttgcccctcggacactgccaaagtgcttacaggc
ggagccgacaagaacgtggtggtgttcgacaagaactccgagcagatcctggccacgctg
aagggtcacggcaggaaggtgaccaacgtagtctaccatcccagcgagaacattgtcttc
tcagcctcccccgacacgacaatccggatctggtcagtgtccagtgcgtcctgtgtgcag
gtggtcagggctcatgagggctcagtgaccggcctgagtctccacgccaccggcgattac
ctgctcagcgcgtccgatgatcagtattgggccttctctgatatccgtacaggccgtgtt
ctcacgaaggtgacggacgaagctgctggctgtgccctgacctgtgcccagttccatccc
gatggcctcatctttggcaccggcaccattgactcacagatcaagatctgggacctgaag
gaacggacaaatgtggccaacttccccggtcactcgggccccatcaccagcatcgccttc
tccgagaacggctactacctggccacggctgctgacgactcccaggtcaaactctgggac
ttacgcaagctcaagaacttcaagaccatccaactggatgaccattacgaggtgaaatgt
ttgacctttgaccagagcggcacttacctggctgtggccggtacagatatccgagtgtac
gtgtgtaagcagtgggccgaggtgttgcacttcacagagcacagtgcgcagaccacgggc
gtggcatttggtgaacattctcgcttcctcgcttccagcagcatggatcggagcctgaaa
ctctacagccagtag
DBGET
integrated database retrieval system
