Hemiscyllium ocellatum (epaulette shark): 132815732
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Entry
132815732 CDS
T09720
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03030
DNA replication
hoc03410
Base excision repair
hoc03420
Nucleotide excision repair
hoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132815732 (rfc1)
03410 Base excision repair
132815732 (rfc1)
03420 Nucleotide excision repair
132815732 (rfc1)
03430 Mismatch repair
132815732 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hoc03032
]
132815732 (rfc1)
03400 DNA repair and recombination proteins [BR:
hoc03400
]
132815732 (rfc1)
DNA replication proteins [BR:
hoc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
132815732 (rfc1)
DNA repair and recombination proteins [BR:
hoc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
132815732 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
Rad17
AAA_30
BRCT_2
AAA_22
AAA_7
AAA_5
AAA_16
RuvB_N
AAA_17
nSTAND3
AAA_33
AAA_18
RNA_helicase
TIP49
NTPase_1
Motif
Other DBs
NCBI-GeneID:
132815732
NCBI-ProteinID:
XP_060680826
LinkDB
All DBs
Position
1:106034748..106121634
Genome browser
AA seq
1206 aa
AA seq
DB search
MTSSPRAARLRVEIVGAKCNGGGEEIETTMDIRRFFGGLSTGKKPGSETLERNRVKNVGK
GTSDTKKKTDTKGKDSCNSISGKQKPVHRKKNIIYDSDSESEETPPDKKSKKNPCTTKPA
KPSKLETVTMVSETDEEEDFQQSRKIAQRYQENGGHPGTSGSGRSADNKLQVKSPQPKPA
SPEKFTCTSVRDYFGTSTVQRSNKKLVASKRKAPSGSAGSTINDEELARQLQLDEDAELE
RQLHEDEQFAKTLAMLDELPKSKKARTDSEGQELSLSLVVNAEPRKTDEQAAEHSGKAKM
LSGTDSNVKNCTEKAVSSKSQSLRTSSQHSPESSSVKVENSFSKSSPVKSSTKLAIMKRK
EELTHVIGNSPTRSAREKRSSPRKEEKTEFSKQGQTKISPKKEEKTISPNKEKISPNKKK
ISPNKSESENPETAEKKRQNYLAYRSFLNRDGPRALGSKEIPQGAENCLEGLSFVITGVL
ESMERDDAKSLIERYGGKLTGNISKKTNYLVTGREGGRAKLDKAESLGTKQIDEDGLLDL
IRRLPGKRSKYEIAAENEVKKSNNVREGGRIMQKGEHHSKTISPISKKQCEDNKSSPSTP
ENGESSRCAKRSILFKADPFSNQPEVKCEPQLQTSMKEEQSLLWVDKYKPAALKNIIGQQ
GEQSCANKLVRWLKQWHVNNSGNPTAKFTKFGGKDDGSSFKAALLSGPPGVGKTTTAALV
CKDLGYSYVELNASDARSKNTLKEVIAESLNNTSIKGFSSGAPSVSTKHLLIMDEVDGMA
GNEDRGGIQEMISLIKRTKVPILCICNDRNHPKIRSLANYCFDLRFQRPRVEQIKGAMMT
VAFKEGLKIPPPAMNEIILAANQDIRQVLHNLSMWCAENKTLTYDQAKENGSKTRKDTKL
GPFDVVRKVFTTGEEAAHMSLIDKSDLFFHDYSIAPLFVQENYLHVKPAAAGTNMKKHLM
LLSKTAESICDGDLVDKRIRSLQSWNLLPTQAIYASVIPGELMRGYMSQFPSFPSWLGKF
SSTNKHDRIVQELTRHMCLRTHASKRAVNLDYLPYLRDTLVQPLTLQGTNGAQEAVATMN
AYYLMKEDVDSIMEISSWAGRPDPFSKLDPKVKAAFTRTYNRETHLTPYALQAVKKLKRG
STAGSSLDTELNDDLQTEDVQSEETEDNLELDGMIKPKKPKAKNKMEEQLPQQKGRKDKG
KRKATK
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacctcatctccgcgcgccgcacgcttgcgcgttgaaattgttggcgccaaatgtaac
ggcggaggagaggagatagagaccaccatggacatcagaagattctttggtggcctttct
actgggaagaaacctgggagtgagactttggaacggaatcgggttaaaaatgttggcaag
ggaacttcagatacaaaaaagaaaactgataccaagggaaaggattcatgcaattcaata
tcaggaaagcaaaagccagtgcacaggaaaaaaaacattatttatgattcagattctgaa
tctgaagagactcctccagataagaaatctaaaaaaaacccttgcactaccaaacctgcg
aagccttccaaactagagactgttacaatggtttctgaaactgatgaagaggaagatttt
caacaaagtaggaagattgcccagaggtatcaagaaaatggtggtcaccctggaacatct
ggctctggaaggtctgcagacaataaattgcaggtcaaatcgccgcagcctaaaccagcg
agtccagagaaattcacctgcacatctgtgcgcgattactttggcacaagcacagttcag
agatcaaataaaaaactggtggctagcaaaaggaaagcaccttcaggcagtgctggttcc
acaattaatgatgaggagctggctcgtcagctgcaacttgatgaggacgcagagcttgag
aggcagctacatgaggatgaacaatttgctaaaacactggcaatgttggatgagttgcca
aaaagtaaaaaggcacgtactgattctgaaggccaggaactatccttatccttggttgta
aacgctgaacccagaaaaacagatgaacaggcagcggaacattctggtaaagccaagatg
ttgagtggaactgacagtaatgtgaaaaattgtactgagaaagctgtaagtagcaaatca
cagagcctgaggacttcctcccaacactcacctgaatcttccagtgttaaagtggaaaac
tcatttagtaaatcatctccagtcaaaagcagtacaaaacttgctatcatgaaacgtaaa
gaagaactaacgcacgtgataggaaacagtccaacaagatcagcccgagagaagagaagt
tcgccaaggaaagaggagaaaactgaattttcaaagcaaggtcaaaccaagatttctcct
aagaaagaagaaaaaactatctctccaaataaagagaagatttctccaaacaaaaagaaa
atatccccaaataaatctgagtctgagaacccagagactgctgaaaagaagcgtcagaat
tacctggcctaccgtagcttcctgaaccgtgatggtcctcgagctctggggtctaaagaa
atccctcagggagctgagaactgcttggaaggactttcgttcgttattacaggagtcctg
gagtccatggaacgtgatgatgctaaatctttaatcgaacgttatggagggaagctgaca
ggaaatattagcaagaaaaccaattacttggtaactggtcgagaaggtggacgagcaaaa
ctggacaaggctgagagtcttggaacaaagcaaattgatgaagatggactgctagatcta
attcgtagattgccaggaaagagatccaagtatgagattgcagctgaaaatgaggtgaag
aaatcaaataatgtaagagagggtggcaggatcatgcagaaaggcgaacaccatagcaag
acgatttcaccgatatcgaagaaacagtgtgaagataacaagagcagtccgtcaacacct
gaaaacggcgagtcttcaagatgtgcaaagaggagtattttgttcaaagcagatcctttc
agcaatcaacctgaagtgaagtgtgaacctcagttgcagacttcaatgaaggaagagcag
agtttgctctgggtggataaatacaaacctgcagcgctgaagaatataataggacagcaa
ggggaacagagctgtgcaaataaactagttcgttggttgaaacaatggcatgtgaacaac
tctggcaaccccacagcaaaattcactaaatttggtggaaaggatgatggttcaagtttc
aaagctgcactgctgtccggtcctcctggtgtaggtaaaacaaccacagccgctctggtc
tgtaaggatctgggctacagctatgttgaacttaatgccagtgatgctcgcagcaaaaac
acactgaaggaagtgatagcagagtcactgaacaatacaagtatcaaaggattctcatca
ggagcaccatcagtaagcactaaacacttgctaatcatggatgaggtggatggaatggct
ggcaatgaggacaggggagggatacaggaaatgatttctctcattaaacggaccaaagtt
cctattctctgtatatgtaatgaccgaaatcatcccaagatccgctcactggccaattac
tgctttgacctccgctttcagcggcctcgggtagaacaaatcaagggagcaatgatgact
gttgcatttaaagaaggcttgaagattccccctcctgctatgaatgaaattatacttgca
gcaaatcaggacatcagacaggttctgcataatctcagtatgtggtgtgcagaaaacaag
actttgacttatgatcaggcaaaagaaaatggcagcaagacgaggaaagatactaaactg
ggtccctttgatgttgtgaggaaagtatttactactggagaggaggccgcccacatgagt
ctgatagacaagtccgaccttttctttcatgattactcaatagcaccgctctttgtgcaa
gaaaactatttgcatgtgaagcccgcagctgctggaacaaacatgaagaagcacctcatg
ctcttgagtaagacagcagaaagtatctgtgatggggatcttgttgataaaagaattcgt
tctctgcagtcgtggaatctcctccctactcaggccatttatgccagtgtgatccctggt
gaattgatgaggggatacatgtcacagtttccaagtttcccaagctggttgggaaaattt
tcatccactaataaacatgatcgtattgtgcaagaacttaccaggcacatgtgcctaagg
acgcatgccagtaaacgagctgtaaacttggattatcttccttacctgcgggatactttg
gtgcagcctctaacacttcagggaacaaatggtgctcaagaggcagttgcaacgatgaat
gcatattatctgatgaaagaggatgtagatagtatcatggagattagcagctgggctggt
cgacctgatcctttctcaaaactagatcctaaggtgaaagctgcatttacacggacctat
aacagagagacacatttgactccctatgcactacaagctgtaaagaaattgaaacgtgga
agtacagctggatcatcactggacactgaacttaatgatgacttgcagacagaggatgta
cagtcagaagagactgaagataatttggaattagatggaatgattaagccaaagaaacca
aaagcaaagaacaaaatggaagaacaattaccacagcagaaaggaagaaaagataaaggg
aaacgaaaggcaaccaaatga
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