Hemiscyllium ocellatum (epaulette shark): 132816053
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Entry
132816053 CDS
T09720
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132816053
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132816053
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132816053
NCBI-ProteinID:
XP_060681455
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Position
1:127114641..127768639
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AA seq
520 aa
AA seq
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MAFPYPRVNHGFLSADQQFIKRRLMKGDQGQAGPAGPPGPPGPPGPRGPPGDTGKDGPRG
MPGAPGEIGPRGETGLMGPQGPPGQKGSIGVTGVPGFHGQKGDSGKDGDPGPKGEIGERG
DKGDFGKPGLKGDKGGKGDPGSSAAGIKGEPGQPGHQGQKGEPGLPGLPGLPGIKGEPGF
WGPQGEPGLPGLPGTKGEKGDGGPPGRGEIGLPGPSGPKGEPGELGMPGRYGVKGDRGDP
GDSGPMGPRGPPGQKGEQGVTEIIDYNGNIHQALQGPPGPQGSPGMPGPKGDTGNPGLPG
AEGRQGPKGSKGDIGVPGDKGSIGLPGLPGVNGEKGEKGEKGDHGSPGPKGTSVVGPPGP
TGSQGPPGPMGPHGLPGPKGEPGLNGVKGGKGEPGQKGDRGPLGLPGASGLDGQPGLRGL
DGPMGPAGPAGPKGDRGEKGAVGNPGPRGPTGLPGIDGDPGLDGFSGPKGDKGERGEKGE
KGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttccttacccaagagtcaatcatgggttcctatcggctgatcagcagtttatt
aagcgacgtctcatgaagggtgatcaaggtcaagctgggccagctggtccaccggggcct
cctggtcctccaggcccacgtggtcctccaggtgacacaggaaaggatggtcctcgggga
atgccaggcgcacctggggaaattggaccaagaggtgaaactggattaatgggaccccag
ggaccaccaggacaaaagggttcgataggagtcactggtgttccaggcttccacgggcaa
aagggtgattctgggaaggatggtgatccaggccccaagggtgagattggagaacgtggt
gataagggtgattttgggaaaccaggactaaaaggtgacaaaggaggaaagggtgaccct
ggatcatcagctgctggaatcaagggtgaaccaggtcaacctgggcatcagggacaaaag
ggtgaaccaggtcttcctgggcttcctggacttcctgggataaagggtgaaccaggattt
tggggacctcagggagaacccggcttgcctggattaccaggaacaaagggagagaaagga
gatggagggccaccaggaagaggtgaaataggcctgcccggaccttcaggtccaaagggc
gagccaggtgaactgggaatgccaggccgctacggtgtaaagggtgaccgtggagaccct
ggggattcagggccaatgggacccagaggtccacctgggcaaaaaggagaacaaggggtg
actgagataatagactacaatggcaatatccatcaagcactccagggaccaccagggcct
caaggatctccaggaatgccaggaccaaagggagacactggtaaccctggacttcctgga
gctgagggaagacagggtcctaaaggttcaaagggtgacattggtgttccaggcgataaa
ggaagcattggtttacctggattacctggtgttaatggagaaaagggagagaaaggagag
aaaggagaccatgggtcacctggtccaaaaggcacttcagttgtaggacccccaggaccc
actggttcacaaggcccaccaggtccaatggggccacatggacttccaggaccgaagggt
gaaccagggttgaatggtgttaaaggagggaagggtgaaccaggtcaaaaaggtgacaga
ggaccccttggtctcccaggtgcatctggcttagatggacagccaggactgcggggtctc
gatggtccaatgggtcctgcagggccagctggcccaaagggagataggggtgaaaaagga
gcagttggtaatccaggcccaaggggacccacaggtttgcctggaattgatggagatcca
gggttagacggtttctctggtccgaaaggagataaaggagaaaggggcgaaaagggggaa
aagggaaagaaaggcaaaaaagggccaaagggggagaaaggagaacagggtgctcctgga
ttagatgcaccttgcccattgggcccagatggattgccgatgccaggatgttggcagaag
tga
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