Hemiscyllium ocellatum (epaulette shark): 132816368
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Entry
132816368 CDS
T09720
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04382
Cornified envelope formation
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04518
Integrin signaling
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132816368
04518 Integrin signaling
132816368
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132816368
09142 Cell motility
04820 Cytoskeleton in muscle cells
132816368
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132816368
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132816368
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132816368
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132816368
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132816368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132816368
NCBI-ProteinID:
XP_060681818
LinkDB
All DBs
Position
6:15677838..15900556
Genome browser
AA seq
1671 aa
AA seq
DB search
MSLCLSRWLLVASLLLIHTHNLEAAACHGCTSTSKCDCSGVKGEKGTIGLPGFAGPIGMP
GFPGVEGPAGPLGPKGDPGEPGLSGKKGIRGPAGSPGFPGTPGLPGLPGQDGPPGAAGIP
GCNGTKGDRGPLGPPGLPGLQGSPGTPGIPGAKGDPGEIIGISVAKGEPGFPGPPGKQGE
PGSPGLRGPTGPAGYPGPVGPPGIPGPPGPKGNMGVQFYGPKGQKGEPGVQGPSGPSGCE
EYQRGTPSKVILTKGEKGDRGYPGPKGFPGNPGRSSIGMKGDKGELGEPGKRGKPGKDGD
PGLPGRDGQQGDPGYPGVPGQDGPKGEKGYRGVDGPPGVIIDIDGNVIYGTRGDPGGPGP
PGIQGERGYPGPPGRPGVPGPPGPSLQGEKGLPGLTGERGQKGEKGDPGLSLSGLPGKDG
LRGLPGPRGPPGPAVTIENCRSFPGPPGPAGPQGLPGEAGLKGAKGDTCFHCNLTALPGL
RGPAGPPGRPGEPGYPGAKGDRGPPGKEGFPGQPGIRGVPGPMGIPGPKGDPGDIQTLPG
VKGDRGDPGFPGAPGVPGLAGLPGKDGIQGPPGTKGEPGNIGFKGEKGLPGSPGLTGAPG
DQGTPGLPGVGEPGFPGEKGARGFPGHPGIPGSPGQKGESGHAVSKPGVPGLPGPQGLRG
EPGSRGDPGLPGSPGLQGATGPKGDPGFPGIGFPGPTGAKGSPGIQGPPGLPGLSGRPGN
DGIPGQLGPPGAKGQPGVGLPGPRGFPGVPGLDGVQGGKGDPGIPGIPGAPGNPGLPGLT
GDKGRTGPTGPLGPPGLPGPAGIGPPGQQGKPGPQGPPGLPGFQGLPGTKGDPGFPGLDI
PGPQGEKGNQGAKGLPGSPGFSGQIGPPGKDGPPGFQGPKGEMGVMGTPGSQGLPGSPGN
VGLPGLKGDRGLPGFPGPSGTGGEKGTKGEVGLVGKPGFIDKSEMEKMKGQKGDTGDPGR
SGFPGQKGYQGIPGDPGVPGEDGQPGLPGQPGPAGDPGRTGEPGFTGTPGEKGSIGEMGL
PGPIGPPGTPGEPGQTGMPGYTGRPGEKGEKGSSGLPGIGVPGDPGPKGDPGLTGFPGDP
GLKGESGFPGLPGSLGPTGQKGDPGAPGLPGNPGLPGQKGSLGLPGEPGFSGSPGLPGPP
GPQGLPGPQGEKGLRGLDGIPGTIGEKGNQGIPGRDIPGTPGLPGLKGSKGDLGLPGFPG
SPGVPGIKGNRGFPGLKGHQGIQGPPGPASLALEGPKGEKGNVGEQGLPGAPGIPGGPGS
PGFKGAKGDKGDTGAPGLPGFPGPKGEQGIQGSPGVAGYQGVPGQKGESGPHGVPGFIGT
KGLPGSPGFPGPQGDRGVPGQPGPPGPAGPQGPLQIVKGDAGFPGRPGEEGPKGYPGFPG
IKGDMGQTGLIGTPGEPGSPGFEGRPGLKGEIGPSGPAGPRGYPGPAGPEGAPGPRGYPG
PASIAHGFLVTRHSQTTEIPSCPQGTLKIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFLFCNINNVCNFASRNDYSYWLATPEPMPMSMAPVVGQTIEPFISRCSVCEAPAMVI
AVHSQTIQIPLCPNGWTSLWIGYSFMMHTSSGAEGSGQALSSPGSCLESFRSAPFIECHG
RGTCNYYANSYSFWLATVESTEMFSKPESETLKAGELRTRISRCQVCMKKT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctgcttgtcccgctggctgcttgtcgcgtccctgctcctgatccatacacac
aacctggaggcagcggcatgtcatggctgtacatcgacttccaagtgcgattgcagtggt
gtgaaaggagaaaagggaacaataggcttacctggctttgcgggacccataggaatgcca
ggattcccaggagttgaaggtcctgctggccctttgggaccaaagggggatcctggagag
ccaggtctatcaggaaagaaaggaatccggggtccagctggttcaccagggtttccaggg
actccaggattgcctggtttaccaggacaagatggaccaccaggagcagcaggaatccca
ggatgtaacggcacaaagggtgatcgtgggccattgggacccccaggattaccaggtctc
caaggatctccgggtacaccaggtattccaggtgcaaagggagacccaggagaaattatt
ggtatttcagttgcaaagggggagccagggttccctggaccaccaggaaaacagggtgaa
ccgggcagtcctggattgcgagggcctactggtccagcaggttatcctggacctgtaggt
cccccaggaatccctggccctcctggaccaaaggggaacatgggagtacagttttatgga
ccaaagggtcagaagggcgagccaggagttcagggaccctcaggtccatctggctgtgaa
gagtaccaaagaggaacaccatcaaaagtcatcctcacaaagggtgagaaaggtgatcga
gggtatccaggtcctaagggttttcctggcaatcctggtcggtcgagtattggaatgaag
ggggataaaggagagttgggagaaccagggaaacgtggtaaacccggaaaagatggtgat
ccaggtctcccaggacgtgatggtcagcaaggtgacccaggatatccaggcgttcctgga
caggatggtcccaagggagagaaaggctatcgtggagttgatggtcctccaggtgttatt
attgatatcgatggaaatgttatttatgggactagaggggatcctggtggcccaggtccc
cctgggatacaaggcgaacgaggctatccaggccccccaggacgtccaggagtaccgggc
cctccaggtccctccctgcaaggtgagaaaggtctgccagggttgacaggagaacgaggt
cagaaaggagagaagggtgatcccggattatcgctgtcaggtttaccaggaaaggatggt
ttaaggggtctccctgggccccgtggtcccccaggacctgcagtgacgattgagaattgt
cgaagtttcccaggaccgcccggacccgctggaccacaaggtttgccaggagaggctgga
ctgaaaggtgccaagggtgatacctgtttccactgtaacctcaccgcgttacctggacta
cggggaccggcgggacctcccggaaggccaggtgagcccggatatccaggggccaaggga
gaccgtggtccaccaggaaaagagggattcccaggtcaacctggaatccgtggtgtccca
gggcccatgggtattcccggtccaaaaggcgatccgggtgatatccaaacattgcccgga
gtgaaaggggatcgtggtgaccctggcttcccaggggctccaggtgtgccgggtctggct
gggttacctgggaaagatggaattcaaggaccaccggggaccaaaggcgagccaggaaac
atcggcttcaaaggggagaagggtttgccaggatcccctggtttaactggagcaccagga
gatcagggaactcctggactaccaggagttggggagccaggctttccgggagaaaagggt
gcacgtggatttccaggacatccgggaatacccggaagcccagggcagaaaggtgaatca
gggcatgctgtcagtaaaccaggagtcccgggtctccctgggccacaagggctaaggggc
gagcctggaagcagaggtgaccctggccttcctggaagcccaggtttgcaaggagctact
gggccgaaaggtgatcccggttttcccggcattggatttccaggcccaactggagcgaaa
ggttcaccaggaattcaaggaccaccaggccttcctggtctttcaggacgtccagggaat
gatggcattccaggccagctgggacccccaggggcaaagggccagccaggagtgggactg
ccgggcccccgaggatttccaggtgtcccaggactcgatggagttcaaggaggtaaaggt
gacccaggaatccctggaataccaggagcaccgggaaaccctggattacctggcctcaca
ggtgataaaggcagaaccggtccaacgggaccactgggccctcctggacttccaggccca
gcaggaattgggccaccaggtcagcagggcaagccaggacctcagggaccaccaggcctc
ccaggattccaaggattgccaggcacgaagggtgatcctggctttccaggtctagacatc
ccaggtccacagggggagaaggggaatcagggagcaaaaggtcttcctggctctccaggt
ttttcagggcaaattgggcccccaggaaaagatggccctccgggatttcaaggtcccaaa
ggagaaatgggggtcatgggtacaccaggaagccaaggattaccgggatctccaggaaat
gtgggacttcctggtctgaaaggtgaccgcggcttgcctggattcccgggaccctctggg
acaggcggtgagaaggggacaaaaggagaagttggtcttgtgggaaagcccggattcata
gataaaagtgagatggagaaaatgaaaggacagaaaggagatacaggagatccaggtagg
tcaggctttccaggacaaaagggctatcaaggtatcccaggtgacccaggggtgccagga
gaagatggacaacctggattaccaggacaaccagggccagctggagatccaggaagaacg
ggagaaccaggatttacgggcactccgggagagaaaggatcaattggggaaatgggcttg
ccaggtcccattgggcctcctggtaccccgggtgaacctggacagacgggcatgcctggt
tatactggacggcctggtgagaaaggtgagaagggcagctcaggactaccaggaattgga
gttccaggtgatccagggccaaagggagatccaggtctaacaggcttcccaggtgatcct
ggcctgaagggtgagtccggttttccgggtttgccgggatcgctgggtccgacgggacag
aagggagatccaggtgctccaggacttccaggtaacccagggctcccaggacagaaaggt
agccttggcctcccaggtgaaccaggtttctcaggaagtccaggactgccaggtcctcct
ggtcctcaaggtctcccaggaccgcaaggagagaaaggcttaagaggtcttgatggaatc
ccaggaacaattggagaaaagggcaatcaaggcatcccaggaagagatatcccagggact
ccaggactaccaggactgaaaggatcgaaaggtgacttgggcttaccaggattcccaggc
tcacctggtgttccaggtattaaaggcaaccgaggattcccaggccttaaaggccaccag
ggcattcaaggtccacctggacctgccagtctggctctggaggggccaaaaggtgaaaaa
ggaaatgttggtgaacaaggccttccaggagcaccaggaattcccggaggtcctggatct
ccaggattcaaaggagccaaaggagacaaaggagacacaggtgccccaggactcccgggc
tttccaggacccaagggagaacagggaatccagggatctcctggcgttgctggttaccaa
ggtgttccaggacagaagggtgaatcaggacctcatggagttccaggctttattggaacc
aaaggtcttccaggatctcccggatttccagggccacagggtgatagaggtgtgcctgga
caaccaggtccacctggtcctgccggaccacaaggacccctgcagattgtgaagggagac
gctggatttcctggccgtccgggagaagaaggaccgaagggataccctgggtttccgggc
attaagggagacatgggtcagactggtctaatcggtactcctggtgaaccagggtctcct
ggatttgagggaaggcctggactgaaaggagaaattggcccatctggtccagcaggtccg
aggggttatccaggacctgccggccctgaaggagctcccggccctcggggatatcctggt
cctgcgtcgatagctcatggcttccttgtgacccgacacagtcaaaccacagagattccc
agctgtccccaagggacattgaaaatctacgatggcttctcgctgctctatgtccagggc
aatgaaagggctcatggtcaagacttgggcacagcaggcagttgcttgcgaagattcagc
acgatgccatttcttttctgtaacatcaacaacgtctgcaatttcgcatcaagaaatgac
tattcctattggctggccacgccagaaccaatgccaatgagtatggctcctgtggttggt
cagactattgagccatttatcagcagatgctctgtttgtgaagctccagcaatggtgatt
gctgtccacagccagacaattcaaatcccactctgccccaatggttggacatccctctgg
atcggctactccttcatgatgcacaccagttcgggagctgaggggtcaggacaggctttg
tcatcacctggttcgtgcctggagtccttccgctcagctcccttcatcgagtgccatggc
cgaggcacctgcaattactacgcaaactcttacagcttctggctcgcgactgttgagagc
acagagatgttcagcaaaccggaatcggagacactcaaggcgggagagctgcgcactcgc
attagccgctgccaagtctgcatgaagaagacgtaa
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integrated database retrieval system
