Hemiscyllium ocellatum (epaulette shark): 132816368
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Entry
132816368 CDS
T09720
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04510
Focal adhesion
hoc04512
ECM-receptor interaction
hoc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132816368
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132816368
09142 Cell motility
04820 Cytoskeleton in muscle cells
132816368
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hoc04147
]
132816368
00536 Glycosaminoglycan binding proteins [BR:
hoc00536
]
132816368
Exosome [BR:
hoc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132816368
Glycosaminoglycan binding proteins [BR:
hoc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132816368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132816368
NCBI-ProteinID:
XP_060681818
LinkDB
All DBs
Position
6:15677838..15900556
Genome browser
AA seq
1671 aa
AA seq
DB search
MSLCLSRWLLVASLLLIHTHNLEAAACHGCTSTSKCDCSGVKGEKGTIGLPGFAGPIGMP
GFPGVEGPAGPLGPKGDPGEPGLSGKKGIRGPAGSPGFPGTPGLPGLPGQDGPPGAAGIP
GCNGTKGDRGPLGPPGLPGLQGSPGTPGIPGAKGDPGEIIGISVAKGEPGFPGPPGKQGE
PGSPGLRGPTGPAGYPGPVGPPGIPGPPGPKGNMGVQFYGPKGQKGEPGVQGPSGPSGCE
EYQRGTPSKVILTKGEKGDRGYPGPKGFPGNPGRSSIGMKGDKGELGEPGKRGKPGKDGD
PGLPGRDGQQGDPGYPGVPGQDGPKGEKGYRGVDGPPGVIIDIDGNVIYGTRGDPGGPGP
PGIQGERGYPGPPGRPGVPGPPGPSLQGEKGLPGLTGERGQKGEKGDPGLSLSGLPGKDG
LRGLPGPRGPPGPAVTIENCRSFPGPPGPAGPQGLPGEAGLKGAKGDTCFHCNLTALPGL
RGPAGPPGRPGEPGYPGAKGDRGPPGKEGFPGQPGIRGVPGPMGIPGPKGDPGDIQTLPG
VKGDRGDPGFPGAPGVPGLAGLPGKDGIQGPPGTKGEPGNIGFKGEKGLPGSPGLTGAPG
DQGTPGLPGVGEPGFPGEKGARGFPGHPGIPGSPGQKGESGHAVSKPGVPGLPGPQGLRG
EPGSRGDPGLPGSPGLQGATGPKGDPGFPGIGFPGPTGAKGSPGIQGPPGLPGLSGRPGN
DGIPGQLGPPGAKGQPGVGLPGPRGFPGVPGLDGVQGGKGDPGIPGIPGAPGNPGLPGLT
GDKGRTGPTGPLGPPGLPGPAGIGPPGQQGKPGPQGPPGLPGFQGLPGTKGDPGFPGLDI
PGPQGEKGNQGAKGLPGSPGFSGQIGPPGKDGPPGFQGPKGEMGVMGTPGSQGLPGSPGN
VGLPGLKGDRGLPGFPGPSGTGGEKGTKGEVGLVGKPGFIDKSEMEKMKGQKGDTGDPGR
SGFPGQKGYQGIPGDPGVPGEDGQPGLPGQPGPAGDPGRTGEPGFTGTPGEKGSIGEMGL
PGPIGPPGTPGEPGQTGMPGYTGRPGEKGEKGSSGLPGIGVPGDPGPKGDPGLTGFPGDP
GLKGESGFPGLPGSLGPTGQKGDPGAPGLPGNPGLPGQKGSLGLPGEPGFSGSPGLPGPP
GPQGLPGPQGEKGLRGLDGIPGTIGEKGNQGIPGRDIPGTPGLPGLKGSKGDLGLPGFPG
SPGVPGIKGNRGFPGLKGHQGIQGPPGPASLALEGPKGEKGNVGEQGLPGAPGIPGGPGS
PGFKGAKGDKGDTGAPGLPGFPGPKGEQGIQGSPGVAGYQGVPGQKGESGPHGVPGFIGT
KGLPGSPGFPGPQGDRGVPGQPGPPGPAGPQGPLQIVKGDAGFPGRPGEEGPKGYPGFPG
IKGDMGQTGLIGTPGEPGSPGFEGRPGLKGEIGPSGPAGPRGYPGPAGPEGAPGPRGYPG
PASIAHGFLVTRHSQTTEIPSCPQGTLKIYDGFSLLYVQGNERAHGQDLGTAGSCLRRFS
TMPFLFCNINNVCNFASRNDYSYWLATPEPMPMSMAPVVGQTIEPFISRCSVCEAPAMVI
AVHSQTIQIPLCPNGWTSLWIGYSFMMHTSSGAEGSGQALSSPGSCLESFRSAPFIECHG
RGTCNYYANSYSFWLATVESTEMFSKPESETLKAGELRTRISRCQVCMKKT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctgcttgtcccgctggctgcttgtcgcgtccctgctcctgatccatacacac
aacctggaggcagcggcatgtcatggctgtacatcgacttccaagtgcgattgcagtggt
gtgaaaggagaaaagggaacaataggcttacctggctttgcgggacccataggaatgcca
ggattcccaggagttgaaggtcctgctggccctttgggaccaaagggggatcctggagag
ccaggtctatcaggaaagaaaggaatccggggtccagctggttcaccagggtttccaggg
actccaggattgcctggtttaccaggacaagatggaccaccaggagcagcaggaatccca
ggatgtaacggcacaaagggtgatcgtgggccattgggacccccaggattaccaggtctc
caaggatctccgggtacaccaggtattccaggtgcaaagggagacccaggagaaattatt
ggtatttcagttgcaaagggggagccagggttccctggaccaccaggaaaacagggtgaa
ccgggcagtcctggattgcgagggcctactggtccagcaggttatcctggacctgtaggt
cccccaggaatccctggccctcctggaccaaaggggaacatgggagtacagttttatgga
ccaaagggtcagaagggcgagccaggagttcagggaccctcaggtccatctggctgtgaa
gagtaccaaagaggaacaccatcaaaagtcatcctcacaaagggtgagaaaggtgatcga
gggtatccaggtcctaagggttttcctggcaatcctggtcggtcgagtattggaatgaag
ggggataaaggagagttgggagaaccagggaaacgtggtaaacccggaaaagatggtgat
ccaggtctcccaggacgtgatggtcagcaaggtgacccaggatatccaggcgttcctgga
caggatggtcccaagggagagaaaggctatcgtggagttgatggtcctccaggtgttatt
attgatatcgatggaaatgttatttatgggactagaggggatcctggtggcccaggtccc
cctgggatacaaggcgaacgaggctatccaggccccccaggacgtccaggagtaccgggc
cctccaggtccctccctgcaaggtgagaaaggtctgccagggttgacaggagaacgaggt
cagaaaggagagaagggtgatcccggattatcgctgtcaggtttaccaggaaaggatggt
ttaaggggtctccctgggccccgtggtcccccaggacctgcagtgacgattgagaattgt
cgaagtttcccaggaccgcccggacccgctggaccacaaggtttgccaggagaggctgga
ctgaaaggtgccaagggtgatacctgtttccactgtaacctcaccgcgttacctggacta
cggggaccggcgggacctcccggaaggccaggtgagcccggatatccaggggccaaggga
gaccgtggtccaccaggaaaagagggattcccaggtcaacctggaatccgtggtgtccca
gggcccatgggtattcccggtccaaaaggcgatccgggtgatatccaaacattgcccgga
gtgaaaggggatcgtggtgaccctggcttcccaggggctccaggtgtgccgggtctggct
gggttacctgggaaagatggaattcaaggaccaccggggaccaaaggcgagccaggaaac
atcggcttcaaaggggagaagggtttgccaggatcccctggtttaactggagcaccagga
gatcagggaactcctggactaccaggagttggggagccaggctttccgggagaaaagggt
gcacgtggatttccaggacatccgggaatacccggaagcccagggcagaaaggtgaatca
gggcatgctgtcagtaaaccaggagtcccgggtctccctgggccacaagggctaaggggc
gagcctggaagcagaggtgaccctggccttcctggaagcccaggtttgcaaggagctact
gggccgaaaggtgatcccggttttcccggcattggatttccaggcccaactggagcgaaa
ggttcaccaggaattcaaggaccaccaggccttcctggtctttcaggacgtccagggaat
gatggcattccaggccagctgggacccccaggggcaaagggccagccaggagtgggactg
ccgggcccccgaggatttccaggtgtcccaggactcgatggagttcaaggaggtaaaggt
gacccaggaatccctggaataccaggagcaccgggaaaccctggattacctggcctcaca
ggtgataaaggcagaaccggtccaacgggaccactgggccctcctggacttccaggccca
gcaggaattgggccaccaggtcagcagggcaagccaggacctcagggaccaccaggcctc
ccaggattccaaggattgccaggcacgaagggtgatcctggctttccaggtctagacatc
ccaggtccacagggggagaaggggaatcagggagcaaaaggtcttcctggctctccaggt
ttttcagggcaaattgggcccccaggaaaagatggccctccgggatttcaaggtcccaaa
ggagaaatgggggtcatgggtacaccaggaagccaaggattaccgggatctccaggaaat
gtgggacttcctggtctgaaaggtgaccgcggcttgcctggattcccgggaccctctggg
acaggcggtgagaaggggacaaaaggagaagttggtcttgtgggaaagcccggattcata
gataaaagtgagatggagaaaatgaaaggacagaaaggagatacaggagatccaggtagg
tcaggctttccaggacaaaagggctatcaaggtatcccaggtgacccaggggtgccagga
gaagatggacaacctggattaccaggacaaccagggccagctggagatccaggaagaacg
ggagaaccaggatttacgggcactccgggagagaaaggatcaattggggaaatgggcttg
ccaggtcccattgggcctcctggtaccccgggtgaacctggacagacgggcatgcctggt
tatactggacggcctggtgagaaaggtgagaagggcagctcaggactaccaggaattgga
gttccaggtgatccagggccaaagggagatccaggtctaacaggcttcccaggtgatcct
ggcctgaagggtgagtccggttttccgggtttgccgggatcgctgggtccgacgggacag
aagggagatccaggtgctccaggacttccaggtaacccagggctcccaggacagaaaggt
agccttggcctcccaggtgaaccaggtttctcaggaagtccaggactgccaggtcctcct
ggtcctcaaggtctcccaggaccgcaaggagagaaaggcttaagaggtcttgatggaatc
ccaggaacaattggagaaaagggcaatcaaggcatcccaggaagagatatcccagggact
ccaggactaccaggactgaaaggatcgaaaggtgacttgggcttaccaggattcccaggc
tcacctggtgttccaggtattaaaggcaaccgaggattcccaggccttaaaggccaccag
ggcattcaaggtccacctggacctgccagtctggctctggaggggccaaaaggtgaaaaa
ggaaatgttggtgaacaaggccttccaggagcaccaggaattcccggaggtcctggatct
ccaggattcaaaggagccaaaggagacaaaggagacacaggtgccccaggactcccgggc
tttccaggacccaagggagaacagggaatccagggatctcctggcgttgctggttaccaa
ggtgttccaggacagaagggtgaatcaggacctcatggagttccaggctttattggaacc
aaaggtcttccaggatctcccggatttccagggccacagggtgatagaggtgtgcctgga
caaccaggtccacctggtcctgccggaccacaaggacccctgcagattgtgaagggagac
gctggatttcctggccgtccgggagaagaaggaccgaagggataccctgggtttccgggc
attaagggagacatgggtcagactggtctaatcggtactcctggtgaaccagggtctcct
ggatttgagggaaggcctggactgaaaggagaaattggcccatctggtccagcaggtccg
aggggttatccaggacctgccggccctgaaggagctcccggccctcggggatatcctggt
cctgcgtcgatagctcatggcttccttgtgacccgacacagtcaaaccacagagattccc
agctgtccccaagggacattgaaaatctacgatggcttctcgctgctctatgtccagggc
aatgaaagggctcatggtcaagacttgggcacagcaggcagttgcttgcgaagattcagc
acgatgccatttcttttctgtaacatcaacaacgtctgcaatttcgcatcaagaaatgac
tattcctattggctggccacgccagaaccaatgccaatgagtatggctcctgtggttggt
cagactattgagccatttatcagcagatgctctgtttgtgaagctccagcaatggtgatt
gctgtccacagccagacaattcaaatcccactctgccccaatggttggacatccctctgg
atcggctactccttcatgatgcacaccagttcgggagctgaggggtcaggacaggctttg
tcatcacctggttcgtgcctggagtccttccgctcagctcccttcatcgagtgccatggc
cgaggcacctgcaattactacgcaaactcttacagcttctggctcgcgactgttgagagc
acagagatgttcagcaaaccggaatcggagacactcaaggcgggagagctgcgcactcgc
attagccgctgccaagtctgcatgaagaagacgtaa
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