Hemiscyllium ocellatum (epaulette shark): 132816388
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Entry
132816388 CDS
T09720
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
132816388
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hoc01009
]
132816388
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hoc04515
]
132816388
Protein phosphatases and associated proteins [BR:
hoc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
132816388
Cell adhesion molecules [BR:
hoc04515
]
Cadherins
Protocadherins
132816388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF7420
Baculo_11_kDa
MAP17
DUF6377
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
132816388
NCBI-ProteinID:
XP_060681859
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All DBs
Position
6:complement(23555300..24289888)
Genome browser
AA seq
1303 aa
AA seq
DB search
MMELRDFYLLFALFACLTVDSALAQELVYTIQEELPENILIGSIPRDLNISAGGGADLIY
RLVSKAGEVPLLRVSSGTGDIYTGSQRVDREKLCPGGGGGGGEGEPGECSFEIEVVILPN
DHFRLVKVKLVVRDVNDNAPMFPSPVINISIPENTLPNSRFPVPSASDPDAGANGVQRYQ
LLDGQSVLGLDVVESPEGEKWPQLVVQRGLDREQKDTYVMKIKVEDGGVPAKSSTAILQV
TVSDVNDNRPVFRESQLEVQLPEDSPPGTSVIQLHATDADVGSNAELRYLFSAQTPAAVR
RSFALDPSLGLITVQRPLDREDVSLHKMTVLATDGSSSPARATVTVNVTDVNDNPPAIDI
RYIISPVNGTVPLSEKDPVNTKIALITVSDRDTDVNGKVVCYIEKEVPFHLKAVYDNQYL
LETSSFLDYEGTNQYAFRIVASDAGKPSLNQSALVRVRLEDENDNPPVFSQPVIELAVPE
NNHRGLYLTTISATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERYIF
TVTARDSGNPPLQSQAAVIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDLD
AGANAEVMASVVGDNANFILDPLSGVIRSNVSFDREQQSSYTFEVKAVDRGRPVRTSIAK
VTINVIDVNDNSPVVIYPPSNSSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYSIVSG
NNKGLFRIDPMTGNITLEEKPTAIDQGLHRLVVNISDLGYPKPLHTLVLVYLYVNDTVNN
ASYVYELIRRTMETPLDKNIGDGTQPWQNEDYLTIMIAIVAGAMVVIVVIFVTILVRCRQ
SSRFKATQRNKQGAEWMSPNQECKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDPAHEPI
NGTITLPAELEEQTIGRFDWGSTPPTTFKPNSPDLARHYKSGSPQPSFHLKPDTPISAKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQPQDEFYEQ
ASPDKRTEADGNSDPNSSDCCTSKPLRSEQQQTTVVMEEEKMPTQHQEPRVAMEGADKVQ
QGSYGEQKEDCTGGQWKAAAYMKVPPSEKSEQGGTCQPEATGAMNSSFPSHTQSAHGEEL
CPICRRLDTLVSTVQRGFNHIHRDINTLQNASQYRGARLSQNVMSLIGAMHTLVRLHHFS
TLPRRDVAIQTSIMLTGRHLGENVGAASSDTTTVSSDNVTTLNNTPPTSSDTVVASNETG
VASSDTGVTSNDTVIEVSVDPDGDSAESMSIEESSQNSSDSDW
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgatggagctgcgggatttctacctgctgttcgccctgttcgcctgcctgacggtggac
tctgccctggctcaggagctggtctacaccatccaggaggagctgccggagaacatcctg
atcggcagcatcccgcgggacctgaacatctcggctggcgggggagcggacctcatctac
cgcctggtgtccaaggcgggcgaggtgccgctgctgcgggtctccagcggcaccggggac
atctacaccggctcgcagcgggtggaccgggagaagctgtgcccgggaggaggaggagga
ggcggcgagggtgagccgggcgagtgctccttcgagatcgaggtggtgatcctgcccaac
gaccacttcaggctggtcaaggtgaagctggtggtgcgcgacgtgaacgacaacgcgccc
atgttcccctcgccggtgatcaacatctccatcccggagaacacgctgcccaacagccgc
ttcccggtgccgtccgccagcgacccggacgccggcgccaacggggtgcagcgctaccag
ctgctggacgggcagagcgtcctcggcctggacgtggtggagagccccgagggcgagaag
tggccgcagctggtggtgcagcggggcttggaccgggagcaaaaggacacctacgtgatg
aagatcaaggtggaggacggcggggtgcccgccaagtccagcaccgccatcctgcaggtg
accgtcagcgatgtcaacgacaaccgcccggtgttccgggagagccagctggaggtgcag
ttgcccgaggactcgccgccgggcacctcggtcatccagctgcacgccaccgacgcggac
gtgggctccaacgccgagctgcggtacctgttcagcgcgcagaccccggcggcggtgcgg
cgctccttcgcgctggacccgagcctggggctcatcaccgtgcagcgcccgctcgaccgg
gaggacgtctcgctgcacaagatgaccgtgctggccaccgacggcagctccagccccgcc
cgcgctaccgtcaccgtcaatgtcaccgatgtcaacgacaacccgcccgccatcgacatc
cgctacatcatcagcccggtgaacggcaccgtgcccctgtccgagaaggacccggtcaac
accaagatcgccctcatcaccgtctccgaccgggacaccgacgtcaacggcaaggtggtc
tgctacatcgagaaggaggtccccttccacctcaaggcagtctacgacaaccagtacctg
ctggagacctcctccttcctggactacgagggcaccaaccagtatgccttcaggatcgtg
gcgtcggacgcgggcaaacccagcctgaaccagagcgccctggtccgggtgaggctggag
gacgagaacgacaacccgccggtcttcagccagcccgtcatcgagctggcggtgcccgag
aacaaccaccgcggcctctacctgaccaccatcagcgccacggacgaggacagcggcaag
aacgccgagatcgtctaccagctggggcccaacgcctccttcttcgacctggaccgcaag
acgggcgtcctcaccgcctcacgggtcttcgaccgggaggagcaggagcgttacattttc
acggtgaccgccagggacagcggcaaccccccgctgcagagccaagctgccgtgatcgtc
acggtgctggacgagaacgacaataaccccaagttcactcataaccacttccagttcttt
gtgtctgagaacttaccaaagtacagcactgtgggagtgattactgtcaccgacctggat
gcaggggccaacgcagaggtgatggcttctgtcgtcggagacaatgcgaatttcattcta
gacccactgagtggtgtgataaggtccaacgtctcttttgacagagagcagcaaagctcc
tacacttttgaagttaaagctgtagacagggggagaccagtccgcacttccattgctaaa
gtcacaatcaatgtcatcgatgtcaatgataacagtcctgttgtaatctatccaccctcc
aactcttcattcaaactagtacccctgtctgctatacctggttccgtggtggcagaagta
tttgctgtggatgttgatacaggtatgaatgctgagctcaaatacagcattgtaagcgga
aataacaagggtttgtttcgaattgaccctatgactggtaatattactttggaggagaaa
ccaactgctatcgaccagggcttgcaccgtttggttgtgaacatcagcgatctaggctat
ccgaaacccttgcacacccttgtgctcgtctacttgtatgtaaatgacactgtaaacaat
gctagttacgtctatgagttaatacggaggacaatggagactccactagataagaacatt
ggagatggcacccagccctggcaaaatgaggattaccttaccataatgatcgccatagtg
gcgggagccatggtggtgatagtggtcatctttgttacaatattggtgcggtgccggcag
tcctcaaggttcaaggctacgcaaaggaacaaacagggtgctgaatggatgtctcctaat
caggagtgtaagcagaacaaaaagaagaaaaggaagaaaagaaaatctccgaagagttct
cttctaaactttgttaccatcgaggaatccaaacctgatgatcctgcccatgagcccatc
aatggaaccattacccttccagctgagctggaagagcagacgataggacggtttgactgg
ggcagcacaccaccaactacatttaagcccaacagcccagacctagcaaggcattacaaa
tctggctctccgcagccctcttttcatctgaagccagacacccctatttctgcgaaaaag
catcacgtgattcaggagctccctttggacaacaccttcgttgggggttgtgacaccctg
tcgaagcgctcttccactagttcagaccacttcagtgcctcggagtgtagctcccaagga
ggcttcaagacaaagggcccattgcacaccagacagccgcaggacgagttctacgagcag
gcttccccagacaagaggaccgaggccgacggcaactctgacccaaattctagtgattgt
tgcacctcaaaacccttgagatcagagcaacaacaaaccactgtggtcatggaggaggag
aagatgccaacccagcatcaggagcctagagtagccatggaaggtgctgacaaggtacaa
caaggttcatatggggaacagaaagaagactgtacaggtgggcaatggaaagcagcagct
tacatgaaagtgccaccctcagagaaatcagagcaaggagggacatgtcagccagaagca
acaggtgctatgaattcctcttttccatcacacactcaaagtgcacatggtgaggagctt
tgtcccatatgtcgtaggttagatacacttgtgagcactgtgcaacgtgggttcaaccac
atacatagggacataaacacattacaaaatgcctctcagtaccgtggagcccgtttgtcc
cagaatgtcatgtctctgattggtgcaatgcacactcttgtgagactccatcatttttcc
acattgccacgcagagatgtggctattcagacctccatcatgctgactggaaggcatctg
ggggaaaatgttggagctgcatctagtgacacaacaactgtatcaagtgataatgtaact
accctcaataacaccccacctacatccagtgacactgtagtggcatccaatgaaactgga
gttgcatccagtgacactggggttacgtcaaatgacacagtgatcgaagtgtcagttgat
cctgatggggattctgcagagagtatgtccattgaggagtcctctcaaaattcttcagac
agtgattggtaa
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