Hemiscyllium ocellatum (epaulette shark): 132816438
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Entry
132816438 CDS
T09720
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
hoc
Hemiscyllium ocellatum (epaulette shark)
Pathway
hoc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hoc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
132816438 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hoc04131
]
132816438 (tgfbrap1)
Membrane trafficking [BR:
hoc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
132816438 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_1
Motif
Other DBs
NCBI-GeneID:
132816438
NCBI-ProteinID:
XP_060682002
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Position
6:complement(72359575..72423139)
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AA seq
862 aa
AA seq
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MSVKAFELVPVLGQDLLIGDKTWISVDCIECCGKNLYVGTSDCCIYHFKLEEKASASGRL
AFTPTKQLHKYLGVKKAVNELKAASALNRLLVLCDNIVILMDMISLEPVPSGAKIKGITA
FVVNENPVTGDPFCIELCAISMKRKTVQIYTVHEDRVQLIKEISTPEQPVDMAVDGYFLC
LAMSTQYIILSYNTGTSQDLFPYNSEDKRPIVKRIGREEFLLAGPSALGMFVTAAGISQR
APVHWSENVIGAAVCFPYVVALDEEFVTVHSMLDQQQKQTIPFRDGHILQDFEGKLILAT
SKEVYFLVPLPLERQIQDLLTSQRVEEALLLTRGARRNIPKEKFQGMYRRILQQAGFIQF
GQLQFLEAKELFRNGQLDVRELMSLYPLLLPSTSTFIRSHPPLHEYADLNQLMQGDQEKI
TKCKRFLMSYLNEIRSTEVANGYKEDIDTALLKLYAEANHDSLLDLLVSENSCLLVDSIP
WLEKHKKYFALGLLYHYNGQHEAALQLWVKIVEGQLQDTTRSDLFEYIVDFLSFCSNHEL
VWKYADWALQKNEEVGVQIFTRRPLDENQTNMNPDDIVNYLHKYKNAVVMYLEHLVFDRN
IQKEKYHTHLAVLYLDKVLELHPQSGSISEELISARRSLKNLLQHSNLYRVHLLLGKIKD
TDLYMECAILHGKLEEHEKALEILVHKLKDFQAAEDYCLWNSDGKDSTCRQRLFHMLLAL
YLQPGVTSDALAMAGVDLLNNYAVEFDAVRVLQQVPDNWSIQLLSPFLTRAIRGSFHSKC
TAELTSGLARSENLNYKYAKVKSRGNIITLSDKKVCQICQGFFTEPVFVRYPDGGLAHIQ
CATKYQSLPATDQNFASRRNQS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaaggcatttgaacttgttcctgtgcttggacaggatctgctgataggagac
aaaacttggatttctgttgactgcattgaatgttgtgggaagaacctttatgtaggaaca
agtgactgctgtatctatcactttaaattggaagagaaagcatccgcctccgggagactt
gcatttactccaacaaaacaactacacaagtatctaggggtaaaaaaagctgtgaatgag
ctgaaggcagcatctgctttgaacaggctattggttttatgtgacaatattgtcatttta
atggatatgatcagcctagagcctgtaccatcaggagctaaaatcaaaggaataactgca
tttgttgtgaatgagaacccagtgactggagaccccttctgtattgagctttgtgccatt
tcaatgaagcggaaaactgtacaaatatacacagtacatgaggaccgtgttcagttaata
aaggaaatatctacaccagagcagccagttgatatggctgtagatgggtacttcctttgc
ttggcaatgagcacacaatatattattttgagttataacactggaacttctcaggatctg
tttccatataatagtgaggacaaacgaccgatagtgaaacggattggtcgagaggaattt
ctattagctggtccaagtgcattgggaatgtttgtaacagctgcaggaatctcccagcgt
gcacctgttcactggtcagagaatgtgattggagcagctgtatgttttccttatgtggta
gctttggatgaagaatttgttacagtacacagcatgcttgaccaacagcagaagcagacc
attccatttagagatggccatatactacaagactttgaagggaaactgattttagctaca
agtaaagaagtgtatttcttggtgcccttgcccttggaaaggcaaattcaagatcttctg
accagccagagagtagaagaagcactgctcctaacaagaggagctcgacgaaacattcca
aaagagaagttccagggtatgtacagaaggattctgcagcaagcaggatttattcagttt
ggccagcttcagtttttggaagctaaagaactcttcaggaacggccagcttgatgttaga
gagttgatgtctctctatccattactgcttccttcaacttcaacatttatacggtcacat
cccccattacatgaatatgctgacttaaatcaattaatgcagggtgaccaggagaagatt
acaaagtgcaagcgcttccttatgagctatttgaatgagattcgcagcactgaagtagca
aacggctataaagaagatattgacacagccttgctaaaactgtatgctgaagctaatcat
gacagcttgctggatttgttggtttcagaaaattcatgtctcttagtggatagtataccc
tggctggagaaacacaaaaagtattttgcacttggtcttctttatcactataatggtcaa
catgaagcagcactacagttatgggtgaagatagttgaaggacagctccaggatacaacc
cgttcagatctttttgagtatattgtggattttctcagcttctgctctaaccatgaactg
gtatggaagtatgcagactgggccttgcagaaaaatgaagaggttggtgtacaaattttc
acaaggcgacccttagatgaaaaccagacaaatatgaatccagatgacattgtcaactac
cttcacaagtataagaatgctgttgtcatgtacttggaacacttggtatttgatagaaat
attcagaaggaaaagtaccacactcatttggctgttctgtacttggataaagtcttagaa
ctgcatccccagtcaggtagcatttcagaagaactaatttcagctcgtcgcagtctcaag
aacctgcttcaacactctaatctctatagggttcatcttttgctaggtaaaattaaagat
actgatctctatatggaatgtgcaatattacatggaaaactggaagaacatgagaaagct
cttgaaatactagttcacaagttaaaggatttccaagcagctgaggactactgtttgtgg
aattctgatggaaaagattctacatgtcggcagaggctctttcacatgttgttagcactt
tatctgcagccaggtgtcaccagtgatgcgttagcaatggctggtgtggaccttctaaat
aactacgctgtcgaatttgatgcagttcgagttttacagcaggtccctgataattggtca
attcaactgctttcaccattcctaaccagggcaataagagggagctttcattcgaagtgc
acagcagaacttacatcaggcttggcaagatctgaaaacttaaattataaatatgcaaag
gtaaaatcaagaggaaacattattacactttcagataaaaaggtctgccaaatatgccag
ggctttttcacagaaccagtctttgtgcgatatccagatggtggtcttgctcatatccag
tgtgctacaaaataccagagtctgcctgctactgatcagaactttgccagtcgcagaaat
cagtcatga
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